Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN005507000
- symbol?: cdaR
- synonyms: cdaR, ybbR
- description?: YbbR family protein
- YbbR family protein
- YbbR-like domain-containing protein
- membrane associated protein
- pseudogene
- putative secreted protein YBBR
- ybbR-like family protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5672159..5673092
- synteny block?: BlockID0042890
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2101
08BA02176:
C248_2190
11819-97:
MS7_2177
6850:
RSAU_001998
71193:
ST398NM01_2217
ECT-R 2:
ECTR2_2015
ED133:
SAOV_2201c
ED98:
SAAV_2216
HO 5096 0412:
SAEMRSA15_20680
JH1:
SaurJH1_2232
JH9:
SaurJH9_2194
JKD6008:
SAA6008_02199
JKD6159:
SAA6159_02071
LGA251:
SARLGA251_19580
M013:
M013TW_2120
MRSA252:
SAR2253
MSHR1132:
SAMSHR1132_19940
MSSA476:
SAS2064
Mu3:
SAHV_2146
Mu50:
SAV2162
MW2:
MW2089
RF122:
SAB2042c
ST398:
SAPIG2217
T0131:
SAT0131_02327
TCH60:
HMPREF0772_11030
TW20:
SATW20_22970
USA300_TCH1516:
USA300HOU_2152
VC40:
SAVC_09675
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHL
N315 MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHL
NCTC8325 MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHL
Newman MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHL
USA300_FPR3757 MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHL
************************************************************
COL TKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKP
N315 TKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKP
NCTC8325 TKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKP
Newman TKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKP
USA300_FPR3757 TKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKP
************************************************************
COL KLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQTVKVTGGEEQLNDIAYLKAT
N315 KLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQTVKVTGGEEQLNDIAYLKAT
NCTC8325 KLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQTVKVTGGEEQLNDIAYLKAT
Newman KLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQTVKVTGGEEQLNDIAYLKAT
USA300_FPR3757 KLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQTVKVTGGEEQLNDIAYLKAT
************************************************************
COL FKTNKKINGDTKDVAEVTAFDKKLNKLNVSIQPNEVNLQVKVEPFSKKVKVNVKQKGSLA
N315 FKTNKKINGDTKDVAEVTAFDKKLNKLNVSIQPNEVNLQVKVEPFSKKVKVNVKQKGSLA
NCTC8325 FKTNKKINGDTKDVAEVTAFDKKLNKLNVSIQPNEVNLQVKVEPFSKKVKVNVKQKGSLA
Newman FKTNKKINGDTKDVAEVTAFDKKLNKLNVSIQPNEVNLQVKVEPFSKKVKVNVKQKGSLA
USA300_FPR3757 FKTNKKINGDTKDVAEVTAFDKKLNKLNVSIQPNEVNLQVKVEPFSKKVKVNVKQKGSLA
************************************************************
COL DDKELSSIDLEDKEIEIFGSRDDLQNISEVDAEVDLDGISESTEKTVKINLPEHVTKAQP
N315 DDKELSSIDLEDKEIEIFGSRDDLQNISEVDAEVDLDGISESTEKTVKINLPEHVTKAQP
NCTC8325 DDKELSSIDLEDKEIEIFGSRDDLQNISEVDAEVDLDGISESTEKTVKINLPEHVTKAQP
Newman DDKELSSIDLEDKEIEIFGSRDDLQNISEVDAEVDLDGISESTEKTVKINLPEHVTKAQP
USA300_FPR3757 DDKELSSIDLEDKEIEIFGSRDDLQNISEVDAEVDLDGISESTEKTVKINLPEHVTKAQP
************************************************************
COL SETKAYINVK
N315 SETKAYINVK
NCTC8325 SETKAYINVK
Newman SETKAYINVK
USA300_FPR3757 SETKAYINVK
**********