PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005600000
• symbol^?: —
• synonym:
• description^?: DUF3885 domain-containing protein

  descriptions from strain specific annotations:

  • DUF3885 domain-containing protein
  • hypothetical protein with DUF3885
  • pseudogene
• strand^?: -
• coordinates^?: 5735921..5737687
• synteny block^?: BlockID0043600
• occurrence^?: in 58% of 33 strains

⊟Orthologs

COL:
SACOL2190
N315:
—
NCTC8325:
SAOUHSC_02458
Newman:
NWMN_2103
USA300_FPR3757:
SAUSA300_2158
04-02981:
—
08BA02176:
C248_2238
11819-97:
—
6850:
RSAU_002042
71193:
ST398NM01_2258
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_21030
JH1:
—
JH9:
—
JKD6008:
SAA6008_02239
JKD6159:
SAA6159_02110
LGA251:
—
M013:
—
MRSA252:
SAR2289
MSHR1132:
—
MSSA476:
SAS2100
Mu3:
—
Mu50:
—
MW2:
MW2125
RF122:
SAB2079c
ST398:
SAPIG2258
T0131:
—
TCH60:
HMPREF0772_10993
TW20:
SATW20_23360
USA300_TCH1516:
USA300HOU_2191
VC40:
SAVC_09880

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MCFDINNLDIKKLNFRKVKNAIHLSLSGDKYQFLEDGKTINNTYFLAVYDNAINIFEDLF
  NCTC8325        MCFDINNLDIKKLNFRKVKNAIHLSLSGDKYQFLEDGKTINNTYFLAVYDNAINIFEDLF
  Newman          MCFDINNLDIKKLNFRKVKNAIHLSLSGDKYQFLEDGKTINNTYFLAVYDNAINIFEDLF
  USA300_FPR3757  ----------------------------------------------------------MF
                                                                            :*
  
  COL             SPSDSINLVHVVYVYSEPYKKTNVIKKFTSLTIDELYYFKEYKKEKDDNILCEEFSYKCS
  NCTC8325        SPSDSINLVHVVYVYSEPYKKTNVIKKFTSLTIDELYYFKEYKKEKDDNILCEEFSYKCS
  Newman          SPSDSINLVHVVYVYSEPYKKTNVIKKFTSLTIDELYYFKEYKKEKDDNILCEEFSYKCS
  USA300_FPR3757  SPSDSINLVHVVYVYSEPYKKTNVIKKFTSLTIDELYYFKEYKKEKDDNILCEEFSYKCS
                  ************************************************************
  
  COL             IKDIKYKKLLKAISNQDFKGLVPNINQNDNYSEIYIINNTKNLIYHLYDDRGLWLAFNNN
  NCTC8325        IKDIKYKKLLKAISNQDFKGLVPNINQNDNYSEIYIINNTKNLIYHLYDDRGLWLAFNNN
  Newman          IKDIKYKKLLKAISNQDFKGLVPNINQNDNYSEIYIINNTKNLIYHLYDDRGLWLAFNNN
  USA300_FPR3757  IKDIKYKKLLKAISNQDFKGLVPNINQNDNYSEIYIINNTKNLIYHLYDDRGLWLAFNNN
                  ************************************************************
  
  COL             EDYARYSEKYNDLISEFDNEDI
  NCTC8325        EDYARYSEKYNDLISEFDNEDI
  Newman          EDYARYSEKYNDLISEFDNEDI
  USA300_FPR3757  EDYARYSEKYNDLISEFDNEDI
                  **********************