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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN005636000
- symbol?: —
- synonym:
- description?: hypothetical protein
- strand?: -
- coordinates?: 5765286..5777495
- synteny block?: BlockID0043890
- occurrence?: in 27% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_02249
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02384 (purL)
TCH60:
—
TW20:
SATW20_23460
USA300_TCH1516:
USA300HOU_2204
VC40:
SAVC_09930
⊟Genome Viewer[edit | edit source]
| COL | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNNSNFLNVELIGTKIITMEDFYKMKEEEFFLKSKLPLYLYSFNYVDEYTMKLLDRGRIS
NCTC8325 MNNSNFLNVELIGTKIITMEDFYKMKEEEFFLKSKLPLYLYSFNYVDEYTMKLLDRGRIS
Newman MNNSNFLNVELIGTKIITMEDFYKMKEEEFFLKSKLPLYLYSFNYVDEYTMKLLDRGRIS
USA300_FPR3757 MNNSNFLNVELIGTKIITMEDFYKMKEEEFFLKSKLPLYLYSFNYVDEYTMKLLDRGRIS
************************************************************
COL ILNTKTNKDCIFDISKYIHENIIFRRDIFELNDIRDDDLKYKINGYNIEVYLSGELEKIV
NCTC8325 ILNTKTNKDCIFDISKYIHENIIFRRDIFELNDIRDDDLKYKINGYNIEVYLSGELEKIV
Newman ILNTKTNKDCIFDISKYIHENIIFRRDIFELNDIRDDDLKYKINGYNIEVYLSGELEKIV
USA300_FPR3757 ILNTKTNKDCIFDISKYIHENIIFRRDIFELNDIRDDDLKYKINGYNIEVYLSGELEKIV
************************************************************
COL KHLFENKFDVEYGFYILFIKPIFEIVFSSNYVKEEFNTKIESSEYRESLDSFNEILMKYL
NCTC8325 KHLFENKFDVEYGFYILFIKPIFEIVFSSNYVKEEFNTKIESSEYRESLDSFNEILMKYL
Newman KHLFENKFDVEYGFYILFIKPIFEIVFSSNYVKEEFNTKIESSEYRESLDSFNEILMKYL
USA300_FPR3757 KHLFENKFDVEYGFYILFIKPIFEIVFSSNYVKEEFNTKIESSEYRESLDSFNEILMKYL
************************************************************
COL ENEINFKEVWKKYIDELFKKLNVQKLLIHKKIESLISSYDKKISDDCSMYSKVFEQYKKT
NCTC8325 ENEINFKEVWKKYIDELFKKLNVQKLLIHKKIESLISSYDKKISDDCSMYSKVFEQYKKN
Newman ENEINFKEVWKKYIDELFKKLNVQKLLIHKKIESLISSYDKKISDDCSMYSKVFEQYKKT
USA300_FPR3757 ENEINFKEVWKKYIDELFKKLNVQKLLIHKKIESLISSYDKKISDDCSMYSKVFEQYKKN
***********************************************************.
COL LYWIK-------------------------------------------------------
NCTC8325 VVLDKVYYSEVYKYSDNLIKVFSEDVWNIMGYKKYNEYFTNRDDTTLKITNLYIGQSFGT
Newman LYWIK-------------------------------------------------------
USA300_FPR3757 VVLDKVYYSEVYKYSDNLIKVFSEDVWNIMGYKKYNEYFTNRDDTTLKITNLYIGQSFGT
: *
COL ------------------------------------------------------------
NCTC8325 EGNRNVIDRIGKGHEKLQEIMTYQPENRKTVLIFYKIQPDNIYITNQYGKEAVSRLKRIL
Newman ------------------------------------------------------------
USA300_FPR3757 EGNRNVIDRIGKGHEKLQEIMTYQPENRKTVLIFYKIQPDNIYITNQYGKEAVSRLKRIL
COL ------------------------------------------------------YITLKF
NCTC8325 EQSIPNKEYIDLSEISLITFFKPEYNKQHVNEEFNSLSSSKIKNLAKENDGIIIYLNFKD
Newman ------------------------------------------------------YITLKF
USA300_FPR3757 EQSIPNKEYIDLSEISLITFFKPEYNKQHVNEEFNSLSSSKIKNLAKENDGIIIYLNFKD
*:.:*
COL INIVII------------------------------------------
NCTC8325 VNYQLISEGNTFFSAKPYLHCVFNKDILNMDKVDIENFFKSIEVKYSK
Newman INIVII------------------------------------------
USA300_FPR3757 VNYQLISEGNTFFSAKPYLHCVFNKDILNMDKVDIENFFKSIEVKYSK
:* :*