PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005646000
• symbol^?: —
• synonym:
• description^?: ATP-dependent Clp protease ATP-binding subunit

  descriptions from strain specific annotations:

  • ATP-dependent Clp protease ATP-binding subunit
  • ClpA-like protein
  • AAA domain protein
  • endopeptidase ClpA
  • S14 family endopeptidase ClpA
• strand^?: -
• coordinates^?: 5777678..5778814
• synteny block^?: BlockID0043890
• occurrence^?: in 27% of 33 strains

Suggest a pan symbol of "dolB" and a description of "Dodola bacteriophage defense system component B" to harmonize with PMID 36302390 with further validation information at DefenseFinder

⊟Orthologs

COL:
SACOL2203
N315:
—
NCTC8325:
SAOUHSC_02472
Newman:
NWMN_2115
USA300_FPR3757:
SAUSA300_2168
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_02250 (clpA)
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02385 (purF)
TCH60:
—
TW20:
SATW20_23470
USA300_TCH1516:
USA300HOU_2205 (clpA)
VC40:
SAVC_09935

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MEIHVYTGPLCGFNEYINSEVKEYHRFMELIREYNIIVRASDTFGTHDVDGIFDTEIENL
  NCTC8325        MEIHVYTGPLCGFNEYINSEVKEYHRFMELIREYNIIVRASDTFGTHDVDGIFDTEIENL
  Newman          MEIHVYTGPLCGFNEYINSEVKEYHRFMELIREYNIIVRASDTFGTHDVDGIFDTEIENL
  USA300_FPR3757  MEIHVYTGPLCGFNEYINSEVKEYHRFMELIREYNIIVRASDTFGTHDVDGIFDTEIENL
                  ************************************************************
  
  COL             VIFSNDFASVTTHVITNFINIVTLGRNIKKIYIQNPPKRVFQSLNSFHDSEIIEINYEYT
  NCTC8325        VIFSNDFASVTTHVITNFINIVTLGRNIKKIYIQNPPKRVFQSLNSFHDSEIIEINYEYT
  Newman          VIFSNDFASVTTHVITNFINIVTLGRNIKKIYIQNPPKRVFQSLNSFHDSEIIEINYEYT
  USA300_FPR3757  VIFSNDFASVTTHVITNFINIVTLGRNIKKIYIQNPPKRVFQSLNSFHDSEIIEINYEYT
                  ************************************************************
  
  COL             TLKKDDVINFYKEQMAGSKIIGQTDAKKQMSIDLYKHTSLENNKPTVMLYYGPSGVGKTE
  NCTC8325        TLKKDDVINFYKEQMAGSKIIGQTDAKKQMSIDLYKHTSLENNKPTVMLYYGPSGVGKTE
  Newman          TLKKDDVINFYKEQMAGSKIIGQTDAKKQMSIDLYKHTSLENNKPTVMLYYGPSGVGKTE
  USA300_FPR3757  TLKKDDVINFYKEQMAGSKIIGQTDAKKQMSIDLYKHTSLENNKPTVMLYYGPSGVGKTE
                  ************************************************************
  
  COL             LAKEIAKKYKGNITRIQFSMMQNDESFNYIFGDEHAKVSLSKDLVDRETNVVLIDEFDKV
  NCTC8325        LAKEIAKKYKGNITRIQFSMMQNDESFNYIFGDEHAKVSLSKDLVDRETNVVLIDEFDKV
  Newman          LAKEIAKKYKGNITRIQFSMMQNDESFNYIFGDEHAKVSLSKDLVDRETNVVLIDEFDKV
  USA300_FPR3757  LAKEIAKKYKGNITRIQFSMMQNDESFNYIFGDEHAKVSLSKDLVDRETNVVLIDEFDKV
                  ************************************************************
  
  COL             LPIYYNVFYQMFDEGIIEDANYKVDVSNCIFILTSNFNSIEEAIVNIGEPVFSRIDSCIK
  NCTC8325        LPIYYNVFYQMFDEGIIEDANYKVDVSNCIFILTSNFNSIEEAIVNIGEPVFSRIDSCIK
  Newman          LPIYYNVFYQMFDEGIIEDANYKVDVSNCIFILTSNFNSIEEAIVNIGEPVFSRIDSCIK
  USA300_FPR3757  LPIYYNVFYQMFDEGIIEDANYKVDVSNCIFILTSNFNSIEEAIVNIGEPVFSRIDSCIK
                  ************************************************************
  
  COL             FLYLTQEEKQKVIENKLNEILSSLNEKEKRIVTAYNLLEKYKETEIDIDNIRYLKKIITN
  NCTC8325        FLYLTQEEKQKVIENKLNEILSSLNEKEKRIVTAYNLLEKYKETEIDIDNIRYLKKIITN
  Newman          FLYLTQEEKQKVIENKLNEILSSLNEKEKRIVTAYNLLEKYKETEIDIDNIRYLKKIITN
  USA300_FPR3757  FLYLTQEEKQKVIENKLNEILSSLNEKEKRIVTAYNLLEKYKETEIDIDNIRYLKKIITN
                  ************************************************************
  
  COL             DIYTIIFEDELFNTDIID
  NCTC8325        DIYTIIFEDELFNTDIID
  Newman          DIYTIIFEDELFNTDIID
  USA300_FPR3757  DIYTIIFEDELFNTDIID
                  ******************