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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN005648000
- symbol?: —
- synonym:
- description?: hypothetical protein
- strand?: -
- coordinates?: 5778815..5779559
- synteny block?: BlockID0043980
- occurrence?: in 27% of 33 strains
Suggest a pan gene symbol of "dolA" and a description of "Dodola bacteriophage defense system component A" to harmonize with PMID 36302390 with further validation information at DefenseFinder
⊟Orthologs[edit | edit source]
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_02251
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02386 (purM)
TCH60:
—
TW20:
SATW20_23480
USA300_TCH1516:
USA300HOU_2206
VC40:
SAVC_09940
⊟Genome Viewer[edit | edit source]
| COL | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTNSIKKIIYFDELSAMDLLQIEKKGNLTKTVQLMHDEKGSASGESKVNMEFGKQSAVKQ
NCTC8325 ----------------MDLLQIEKKGNLTKTVQLMHDEKGSASGESKVNMEFGKQSAVKQ
Newman MTNTIKKIIYFDELSAMDLLQIEKKGNLTKTVQLMHDEKGSASGESKVNMEFGKQSAVKQ
USA300_FPR3757 MTNTIKKIIYFDELSAMDLLQIEKKGNLTKTVQLMHDEKGSASGESKVNMEFGKQSAVKQ
********************************************
COL IFDSLLGMSASASASAGINGNITGERVAKTILENTLIYDFLDTVEFRKKKTIIDISEGFK
NCTC8325 IFDSLLGMSASASASAGINGNITGERVAKTILENTLIYDFLDTVEFRKKKTIIDISEGFK
Newman IFDSLLGMSASASASAGINGNITGERVAKTILENTLIYDFLDTVEFRKKKTIIDISEGFK
USA300_FPR3757 IFDSLLGMSASASASAGINGNITGERVAKTILENTLIYDFLDTVEFRKKKTIIDISEGFK
************************************************************
COL LNIQQDTMTYFATITPIASMFEGSKHLDEEELSFDVSKMNEAIRSIKGYFELIGTRGNEN
NCTC8325 LNIQQDTMTYFATITPIASMFEGSKHLDEEELSFDVSKMNEAIRSIKGYFELIGTRGNEN
Newman LNIQQDTMTYFATITPIASMFEGSKHLDEEELSFDVSKMNEAIRSIKGYFELIGTRGNEN
USA300_FPR3757 LNIQQDTMTYFATITPIASMFEGSKHLDEEELSFDVSKMNEAIRSIKGYFELIGTRGNEN
************************************************************
COL RVFRFNIESFKNNYRIQDLKFMNLTLYSVLVGEISKENLNYDKEFDLNQGAKPSGIGKFK
NCTC8325 RVFRFNIESFKNNYRIQDLKFMNLTLYSVLVGEISKENLNYDKEFDLNQGAKPSGIGKFK
Newman RVFRFNIESFKNNYRIQDLKFMNLTLYSVLVGEISKENLNYDKEFDLNQGAKPSGIGKFK
USA300_FPR3757 RVFRFNIESFKNNYRIQDLKFMNLTLYSVLVGEISKENLNYDKEFDLNQGAKPSGIGKFK
************************************************************
COL GIRSEATKEDKYQVYDVILAGVK
NCTC8325 GIRSEATKEDKYQVYDVILAGVK
Newman GIRSEATKEDKYQVYDVILAGVK
USA300_FPR3757 GIRSEATKEDKYQVYDVILAGVK
***********************