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Summary[edit | edit source]

  • pan ID?: SAUPAN005687000
  • symbol?: rplF
  • synonym:
  • description?: 50S ribosomal protein L6
  • strand?: -
  • coordinates?: 5803733..5804269
  • synteny block?: BlockID0044330
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    SACOL2224 (rplF)
    N315:
    SA2033 (rplF)
    NCTC8325:
    Newman:
    NWMN_2137 (rplF)
    USA300_FPR3757:
    04-02981:
    SA2981_2173 (rplF)
    08BA02176:
    C248_2271 (rplF)
    11819-97:
    MS7_2255 (rplF)
    6850:
    RSAU_002071 (rplF)
    71193:
    ST398NM01_2288
    ECT-R 2:
    ECTR2_2097
    ED133:
    SAOV_2272c
    ED98:
    SAAV_2297 (rplF)
    HO 5096 0412:
    SAEMRSA15_21340 (rplF)
    JH1:
    SaurJH1_2303 (rplF)
    JH9:
    SaurJH9_2262 (rplF)
    JKD6008:
    SAA6008_02272 (rplF)
    JKD6159:
    SAA6159_02142 (rplF)
    LGA251:
    SARLGA251_20210 (rplF)
    M013:
    M013TW_2195
    MRSA252:
    SAR2320 (rplF)
    MSHR1132:
    SAMSHR1132_20610
    MSSA476:
    SAS2126 (rplF)
    Mu3:
    SAHV_2219 (rplF)
    Mu50:
    SAV2235 (rplF)
    MW2:
    MW2154 (rplF)
    RF122:
    SAB2107c (rplF)
    ST398:
    SAPIG2288
    T0131:
    SAT0131_02408
    TCH60:
    HMPREF0772_10963 (rplF)
    TW20:
    SATW20_23690 (rplF)
    USA300_TCH1516:
    USA300HOU_2226 (rplF)
    VC40:
    SAVC_10045 (rplF)

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MSRVGKKIIDIPSDVTVTFDGNHVTVKGPKGELSRTLNERMTFKQEENTIEVVRPSDSKE
    N315            MSRVGKKIIDIPSDVTVTFDGNHVTVKGPKGELSRTLNERMTFKQEENTIEVVRPSDSKE
    NCTC8325        MSRVGKKIIDIPSDVTVTFDGNHVTVKGPKGELSRTLNERMTFKQEENTIEVVRPSDSKE
    Newman          MSRVGKKIIDIPSDVTVTFDGNHVTVKGPKGELSRTLNERMTFKQEENTIEVVRPSDSKE
    USA300_FPR3757  MSRVGKKIIDIPSDVTVTFDGNHVTVKGPKGELSRTLNERMTFKQEENTIEVVRPSDSKE
                    ************************************************************

    COL             DRTNHGTTRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEEN
    N315            DRTNHGTTRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEEN
    NCTC8325        DRTNHGTTRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEEN
    Newman          DRTNHGTTRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEEN
    USA300_FPR3757  DRTNHGTTRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEEN
                    ************************************************************

    COL             ITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKTGK
    N315            ITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKTGK
    NCTC8325        ITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKTGK
    Newman          ITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKTGK
    USA300_FPR3757  ITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKTGK
                    **********************************************************