PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005791000
• symbol^?: —
• synonym:
• description^?: transporter

  descriptions from strain specific annotations:

  • transporter
  • putative transposase
  • pseudogene
• strand^?: +
• coordinates^?: 5878923..5879303
• synteny block^?: BlockID0045360
• occurrence^?: in 36% of 33 strains

⊟Orthologs

COL:
SACOL2305
N315:
—
NCTC8325:
SAOUHSC_02586
Newman:
NWMN_2214
USA300_FPR3757:
SAUSA300_2263
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
RSAU_000900
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_02348
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS2205
Mu3:
—
Mu50:
—
MW2:
MW2233
RF122:
—
ST398:
—
T0131:
SAT0131_02493
TCH60:
—
TW20:
SATW20_24440
USA300_TCH1516:
USA300HOU_2295
VC40:
SAVC_10425

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  NCTC8325        MMLKITSYSYTQSEFSGRRIEKLLHNSIRMMWLAQDQTPSYKTINLFRVNPNTDALIESL
  Newman          MMLKITSYSYTQSEFSGRRIEKLLHNSIRMMWLAQDQTPSYKTINLFRVNPNTDALIESL
  USA300_FPR3757  MMLKITSYSYTQSEFSGRRIEKLLHNSIRMMWLAQDQTPSYKTINLFRVNPNTDALIESL
                  ************************************************************
  
  NCTC8325        FIQFHNKMHIKKADFYQIINRNQLFSLPKNLMSRPLYLRINTYY
  Newman          FIQFHNKMHIKKADFYQIINRNQLFSLPKNLMSRPLYLRINTYY
  USA300_FPR3757  FIQFHNKMHIKKADFYQIINRNQLFSLPKNLMSRPLYLRINTYY
                  ********************************************