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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005858000
- symbol?: tcaB
- synonym:
- description?: Bcr/CflA family drug resistance efflux transporter
- Bcr/CflA family drug resistance efflux transporter
- tcaB protein
- multidrug effflux MFS transporter
- teicoplanin resistance-associated Bcr/CflA subfamily drug resistance transporter, putative
- teicoplanin resistance associated membrane protein TcaB protein
- teicoplanin resistance associated protein B
- Bcr/CflA subfamily drug resistance transporter
- bicyclomycin and teicoplanin resistance protein
- Drug resistance transporter, Bcr/CflA subfamily
- drug resistance transporter, Bcr/CflA subfamily protein
- major facilitator superfamily teicoplanin:cation symporter
- MFS family major facilitator transporter, teicoplanin:cation symporter
- teicoplanin resistance associated membraneprotein
- Teicoplanin resistance associated membrane protein TcaB
- teicoplanin resistance protein TcaB
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5934663..5935880
- synteny block?: BlockID0046030
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2294 (tcaB)
08BA02176:
C248_2400 (tcaB)
11819-97:
MS7_2373
6850:
RSAU_002189 (tcaB)
71193:
ST398NM01_2408
ECT-R 2:
ECTR2_2215
ED133:
SAOV_2398c
ED98:
SAAV_2419 (tcaB)
HO 5096 0412:
SAEMRSA15_22530 (tcaB)
JH1:
SaurJH1_2425
JH9:
SaurJH9_2379
JKD6008:
SAA6008_02392 (tcaB)
JKD6159:
SAA6159_02259 (tcaB)
LGA251:
SARLGA251_21370 (tcaB)
M013:
M013TW_2313
MRSA252:
SAR2441 (tcaB)
MSHR1132:
SAMSHR1132_21800
MSSA476:
SAS2246
Mu3:
SAHV_2339 (tcaB)
Mu50:
SAV2355 (tcaB)
MW2:
MW2276 (tcaB)
RF122:
SAB2234c (tcaB)
ST398:
SAPIG2408
T0131:
SAT0131_02542
TCH60:
HMPREF0772_10838 (tcaB)
TW20:
SATW20_24860 (tcaB)
USA300_TCH1516:
USA300HOU_2337 (tcaB)
VC40:
SAVC_10635
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNDLTHFNKRSPIFIIILGSLTAIGALSIDMFLPGLPDIRHDFQTTTSNAQLTLSMFMIG
N315 MNDLTHFNKRSPIFIIILGSLTAIGALSIDMFLPGLPDIRHDFQTTTSNAQLTLSMFMIG
NCTC8325 MNDLTHFNKRSPIFIIILGSLTAIGALSIDMFLPGLPDIRHDFQTTTSNAQLTLSMFMIG
Newman MNDLTHFNKRSPIFIIILGSLTAIGALSIDMFLPGLPDIRHDFQTTTSNAQLTLSMFMIG
USA300_FPR3757 MNDLTHFNKRSPIFIIILGSLTAIGALSIDMFLPGLPDIRHDFQTTTSNAQLTLSMFMIG
************************************************************
COL LAFGNLFAGPISDSTGRRKPLIIAMIIFTLASLGIVFVHNIWLMVALRFLQGVTGGAAAV
N315 LAFGNLFAGPISDSTGRRKPLIIAMIIFTLASLGIVFVHNIWLMVALRFLQGVTGGAAAV
NCTC8325 LAFGNLFAGPISDSTGRRKPLIIAMIIFTLASLGIVFVHNIWLMVALRFLQGVTGGAAAV
Newman LAFGNLFAGPISDSTGRRKPLIIAMIIFTLASLGIVFVHNIWLMVALRFLQGVTGGAAAV
USA300_FPR3757 LAFGNLFAGPISDSTGRRKPLIIAMIIFTLASLGIVFVHNIWLMVALRFLQGVTGGAAAV
************************************************************
COL ISRAIASDMYSGNELTKFMALLMLVNGIAPVVAPTIGGIILNYSVWRMVFVILTIFGFVM
N315 ISRAIASDMYSGNELTKFMALLMLVNGIAPVVAPTIGGIILNYSVWRMVFVILTIFGFVM
NCTC8325 ISRAIASDMYSGNELTKFMALLMLVNGIAPVVAPTIGGIILNYSVWRMVFVILTIFGFVM
Newman ISRAIASDMYSGNELTKFMALLMLVNGIAPVVAPTIGGIILNYSVWRMVFVILTIFGFVM
USA300_FPR3757 ISRAIASDMYSGNELTKFMALLMLVNGIAPVVAPTIGGIILNYSVWRMVFVILTIFGFVM
************************************************************
COL VIGSLLKVPESLTVTNRESSSGLKTMFKNFKILLKTPRFVLPMLIQGMTFVILFTYISAS
N315 VIGSLLKVPESLTVTNRESSSGLKTMFKNFKILLKTPRFVLPMLIQGMTFVILFTYISAS
NCTC8325 VIGSLLKVPESLTVTNRESSSGLKTMFKNFKILLKTPRFVLPMLIQGMTFVILFTYISAS
Newman VIGSLLKVPESLTVTNRESSSGLKTMFKNFKILLKTPRFVLPMLIQGMTFVILFTYISAS
USA300_FPR3757 VIGSLLKVPESLTVTNRESSSGLKTMFKNFKILLKTPRFVLPMLIQGMTFVILFTYISAS
************************************************************
COL PFIIQKIYGMTAIQFSWMFAGIGITLIISSQLTGYLVDFIDSQKLMRGMTMIQIIGVILV
N315 PFIIQKIYGMTAIQFSWMFAGIGITLIISSQLTGYLVDFIDSQKLMRGMTMIQIIGVILV
NCTC8325 PFIIQKIYGMTAIQFSWMFAGIGITLIISSQLTGYLVDFIDSQKLMRGMTMIQIIGVILV
Newman PFIIQKIYGMTAIQFSWMFAGIGITLIISSQLTGYLVDFIDSQKLMRGMTMIQIIGVILV
USA300_FPR3757 PFIIQKIYGMTAIQFSWMFAGIGITLIISSQLTGYLVDFIDSQKLMRGMTMIQIIGVILV
************************************************************
COL TIVLLNHWNFWILAIGFIILIAPVTGVATLGFTIAMDESSSGRGSSSSLLGLVQFLFGGV
N315 TIVLLNHWNFWILAIGFIILIAPVTGVATLGFTIAMDESSSGRGSSSSLLGLVQFLFGGV
NCTC8325 TIVLLNHWNFWILAIGFIILIAPVTGVATLGFTIAMDESSSGRGSSSSLLGLVQFLFGGV
Newman TIVLLNHWNFWILAIGFIILIAPVTGVATLGFTIAMDESSSGRGSSSSLLGLVQFLFGGV
USA300_FPR3757 TIVLLNHWNFWILAIGFIILIAPVTGVATLGFTIAMDESSSGRGSSSSLLGLVQFLFGGV
************************************************************
COL ASPLVGVKGEDNPIPYIIIIIATAVILIILQIYNMKVFKTNR
N315 ASPLVGVKGEDNPIPYIIIIIATAVILIILQIYNMKVFKTNR
NCTC8325 ASPLVGVKGEDNPIPYIIIIIATAVILIILQIYNMKVFKTNR
Newman ASPLVGVKGEDNPIPYIIIIIATAVILIILQIYNMKVFKTNR
USA300_FPR3757 ASPLVGVKGEDNPIPYIIIIIATAVILIILQIYNMKVFKTNR
******************************************