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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005958000
- symbol?: hlgA
- synonym:
- description?: gamma-hemolysin component A
- gamma-hemolysin component A
- bi-component gamma-hemolysin HlgAB subunit A
- gamma-hemolysin, component A
- gamma-hemolysin component A precursor
- gamma-hemolysin h-gamma-II subunit
- gamma-hemolysin subunit II
- beta-channel forming cytolysin
- leukocidin-S subunit
- gamma-hemolysin chain II
- gamma-hemolysin chain II precursor
- gamma-hemolysin component A precursor, HlgA
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 6019481..6020446
- synteny block?: BlockID0047020
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2356 (hlgA)
08BA02176:
C248_2466 (hlgA)
11819-97:
MS7_2434 (hlgA)
6850:
RSAU_002258 (hlgA)
71193:
ST398NM01_2471
ECT-R 2:
ECTR2_2278
ED133:
SAOV_2467
ED98:
SAAV_2485 (hlgA)
HO 5096 0412:
SAEMRSA15_23180 (hlgA)
JH1:
SaurJH1_2493
JH9:
SaurJH9_2445
JKD6008:
SAA6008_02460 (hlgA)
JKD6159:
SAA6159_02320 (hlgA)
LGA251:
SARLGA251_22010 (hlgA)
M013:
M013TW_2380
MRSA252:
SAR2509 (hlgA)
MSHR1132:
SAMSHR1132_22480
MSSA476:
SAS2310
Mu3:
SAHV_2403 (hlgA)
Mu50:
SAV2419 (hlgA)
MW2:
MW2342 (hlgA)
RF122:
SAB2300 (hlgA)
ST398:
SAPIG2471
T0131:
SAT0131_02612
TCH60:
HMPREF0772_10768 (hlgA)
TW20:
SATW20_25490 (hlgA)
USA300_TCH1516:
USA300HOU_2402 (hlgA)
VC40:
SAVC_10970
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIKNKILTATLAVGLIAPLANPFIEISKAENKIEDIGQGAEIIKRTQDITSKRLAITQNI
N315 MIKNKILTATLAVGLIAPLANPFIEISKAENKIEDIGQGAEIIKRTQDITSKRLAITQNI
NCTC8325 MIKNKILTATLAVGLIAPLANPFIEISKAENKIEDIGQGAEIIKRTQDITSKRLAITQNI
Newman MIKNKILTATLAVGLIAPLANPFIEISKAENKIEDIGQGAEIIKRTQDITSKRLAITQNI
USA300_FPR3757 MIKNKILTATLAVGLIAPLANPFIEISKAENKIEDIGQGAEIIKRTQDITSKRLAITQNI
************************************************************
COL QFDFVKDKKYNKDALVVKMQGFISSRTTYSDLKKYPYIKRMIWPFQYNISLKTKDSNVDL
N315 QFDFVKDKKYNKDALVVKMQGFISSRTTYSDLKKYPYIKRMIWPFQYNISLKTKDSNVDL
NCTC8325 QFDFVKDKKYNKDALVVKMQGFISSRTTYSDLKKYPYIKRMIWPFQYNISLKTKDSNVDL
Newman QFDFVKDKKYNKDALVVKMQGFISSRTTYSDLKKYPYIKRMIWPFQYNISLKTKDSNVDL
USA300_FPR3757 QFDFVKDKKYNKDALVVKMQGFISSRTTYSDLKKYPYIKRMIWPFQYNISLKTKDSNVDL
************************************************************
COL INYLPKNKIDSADVSQKLGYNIGGNFQSAPSIGGSGSFNYSKTISYNQKNYVTEVESQNS
N315 INYLPKNKIDSADVSQKLGYNIGGNFQSAPSIGGSGSFNYSKTISYNQKNYVTEVESQNS
NCTC8325 INYLPKNKIDSADVSQKLGYNIGGNFQSAPSIGGSGSFNYSKTISYNQKNYVTEVESQNS
Newman INYLPKNKIDSADVSQKLGYNIGGNFQSAPSIGGSGSFNYSKTISYNQKNYVTEVESQNS
USA300_FPR3757 INYLPKNKIDSADVSQKLGYNIGGNFQSAPSIGGSGSFNYSKTISYNQKNYVTEVESQNS
************************************************************
COL KGVKWGVKANSFVTPNGQVSAYDQYLFAQDPTGPAARDYFVPDNQLPPLIQSGFNPSFIT
N315 KGVKWGVKANSFVTPNGQVSAYDQYLFAQDPTGPAARDYFVPDNQLPPLIQSGFNPSFIT
NCTC8325 KGVKWGVKANSFVTPNGQVSAYDQYLFAQDPTGPAARDYFVPDNQLPPLIQSGFNPSFIT
Newman KGVKWGVKANSFVTPNGQVSAYDQYLFAQDPTGPAARDYFVPDNQLPPLIQSGFNPSFIT
USA300_FPR3757 KGVKWGVKANSFVTPNGQVSAYDQYLFAQDPTGPAARDYFVPDNQLPPLIQSGFNPSFIT
************************************************************
COL TLSHERGKGDKSEFEITYGRNMDATYAYVTRHRLAVDRKHDAFKNRNVTVKYEVNWKTHE
N315 TLSHERGKGDKSEFEITYGRNMDATYAYVTRHRLAVDRKHDAFKNRNVTVKYEVNWKTHE
NCTC8325 TLSHERGKGDKSEFEITYGRNMDATYAYVTRHRLAVDRKHDAFKNRNVTVKYEVNWKTHE
Newman TLSHERGKGDKSEFEITYGRNMDATYAYVTRHRLAVDRKHDAFKNRNVTVKYEVNWKTHE
USA300_FPR3757 TLSHERGKGDKSEFEITYGRNMDATYAYVTRHRLAVDRKHDAFKNRNVTVKYEVNWKTHE
************************************************************
COL VKIKSITPK
N315 VKIKSITPK
NCTC8325 VKIKSITPK
Newman VKIKSITPK
USA300_FPR3757 VKIKSITPK
*********