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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005960000
- symbol?: hlgC
- synonym:
- description?: gamma-hemolysin component C
- gamma-hemolysin component C
- bi-component gamma-hemolysin HlgCB subunit C
- gamma hemolysin, component C
- gamma-hemolysin component C precursor
- leukocidin s subunit
- beta-channel forming cytolysin
- gamma-hemolysin component C precursor, HlgC
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 6022158..6023108
- synteny block?: BlockID0047040
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2357 (hlgC)
08BA02176:
C248_2468 (hlgC)
11819-97:
MS7_2435 (hlgC)
6850:
RSAU_002259 (hlgC)
71193:
ST398NM01_2473
ECT-R 2:
ECTR2_2279
ED133:
SAOV_2469
ED98:
SAAV_2486 (hlgC)
HO 5096 0412:
SAEMRSA15_23190 (hlgC)
JH1:
SaurJH1_2494
JH9:
SaurJH9_2446
JKD6008:
SAA6008_02461 (hlgC)
JKD6159:
SAA6159_02321 (hlgC)
LGA251:
SARLGA251_22020 (hlgC)
M013:
M013TW_2382
MRSA252:
SAR2510 (hlgC)
MSHR1132:
SAMSHR1132_22490
MSSA476:
SAS2311
Mu3:
SAHV_2404 (hlgC)
Mu50:
SAV2420 (hlgC)
MW2:
MW2343 (hlgC)
RF122:
SAB2301 (hlgC)
ST398:
SAPIG2473
T0131:
SAT0131_02615
TCH60:
HMPREF0772_10767 (hlgC)
TW20:
SATW20_25500 (hlgC)
USA300_TCH1516:
USA300HOU_2404 (hlgC)
VC40:
SAVC_10975
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLKNKILTTTLSVSLLAPLANPLLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQ
N315 MLKNKILATTLSVSLLAPLANPLLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQ
NCTC8325 MLKNKILTTTLSVSLLAPLANPLLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQ
Newman MLKNKILTTTLSVSLLAPLANPLLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQ
USA300_FPR3757 MLKNKILTTTLSVSLLAPLANPLLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQ
*******:****************************************************
COL NIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYV
N315 NIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYV
NCTC8325 NIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYV
Newman NIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYV
USA300_FPR3757 NIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYV
************************************************************
COL SLINYLPKNKIESTNVSQILGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQ
N315 SLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQ
NCTC8325 SLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQ
Newman SLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQ
USA300_FPR3757 SLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQ
****************** *****************************************
COL NSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPS
N315 NSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPS
NCTC8325 NSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPS
Newman NSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPS
USA300_FPR3757 NSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPS
************************************************************
COL FIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRVHNAFVNRNYTVKY
N315 FIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRVHNAFVNRNYTVKY
NCTC8325 FIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRVHNAFVNRNYTVKY
Newman FIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRVHNAFVNRNYTVKY
USA300_FPR3757 FIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRVHNAFVNRNYTVKY
************************************************************
COL EVNWKTHEIKVKGQN
N315 EVNWKTHEIKVKGQN
NCTC8325 EVNWKTHEIKVKGQN
Newman EVNWKTHEIKVKGQN
USA300_FPR3757 EVNWKTHEIKVKGQN
***************