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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005961000
- symbol?: hlgB
- synonym:
- description?: gamma-hemolysin component B
- gamma-hemolysin component B
- gamma hemolysin, component B
- bi-component gamma-hemolysin HlgAB/HlgCB subunit B
- gamma-hemolysin component B precursor
- leukocidin f subunit
- leukocidin-F subunit (Gamma-hemolysin, H-gamma-I subunit)
- beta-channel forming cytolysin
- gamma-hemolysin component C precursor, HlgB
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 6023116..6023923
- synteny block?: BlockID0047050
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2358 (hlgB)
08BA02176:
C248_2469 (hlgB)
11819-97:
MS7_2436
6850:
RSAU_002260 (hlgB)
71193:
ST398NM01_2474
ECT-R 2:
ECTR2_2280
ED133:
SAOV_2470
ED98:
SAAV_2487 (hlgB)
HO 5096 0412:
SAEMRSA15_23200 (hlgB)
JH1:
SaurJH1_2495
JH9:
SaurJH9_2447
JKD6008:
SAA6008_02462 (hlgB)
JKD6159:
SAA6159_02322 (hlgB)
LGA251:
SARLGA251_22030 (hlgB)
M013:
M013TW_2383
MRSA252:
SAR2511 (hlgB)
MSHR1132:
SAMSHR1132_22500
MSSA476:
SAS2312
Mu3:
SAHV_2405 (hlgB)
Mu50:
SAV2421 (hlgB)
MW2:
MW2344 (hlgB)
RF122:
SAB2302 (hlgB)
ST398:
SAPIG2474
T0131:
SAT0131_02616 (phoB)
TCH60:
HMPREF0772_10766 (hlgB)
TW20:
SATW20_25510 (hlgB)
USA300_TCH1516:
USA300HOU_2405 (hlgB)
VC40:
SAVC_10980
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQ
N315 MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQ
NCTC8325 MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQ
Newman MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQ
USA300_FPR3757 MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQ
************************************************************
COL ILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSV
N315 ILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSV
NCTC8325 ILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSV
Newman ILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSV
USA300_FPR3757 ILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSV
************************************************************
COL NVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLS
N315 NVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLS
NCTC8325 NVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLS
Newman NVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLS
USA300_FPR3757 NVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLS
************************************************************
COL RNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMP
N315 RNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMP
NCTC8325 RNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMP
Newman RNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMP
USA300_FPR3757 RNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMP
************************************************************
COL LLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTF
N315 LLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTF
NCTC8325 LLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTF
Newman LLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTF
USA300_FPR3757 LLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTF
************************************************************
COL KSTYEIDWENHKVKLLDTKETENNK
N315 KSTYEIDWENHKVKLLDTKETENNK
NCTC8325 KSTYEIDWENHKVKLLDTKETENNK
Newman KSTYEIDWENHKVKLLDTKETENNK
USA300_FPR3757 KSTYEIDWENHKVKLLDTKETENNK
*************************