Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN005967000
- symbol?: bioD
- synonym:
- description?: dethiobiotin synthase
- dethiobiotin synthase
- dethiobiotin synthetase
- putative dethiobiotin synthetase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6028770..6029456
- synteny block?: BlockID0047110
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2364 (bioD)
08BA02176:
C248_2475 (bioD)
11819-97:
MS7_2442 (bioD)
6850:
RSAU_002266 (bioD)
71193:
ST398NM01_2480
ECT-R 2:
ECTR2_2286 (bioD)
ED133:
SAOV_2476c
ED98:
SAAV_2493 (bioD)
HO 5096 0412:
SAEMRSA15_23260
JH1:
SaurJH1_2501
JH9:
SaurJH9_2453
JKD6008:
SAA6008_02469 (bioD)
JKD6159:
SAA6159_02328 (bioD)
LGA251:
SARLGA251_22090
M013:
M013TW_2389
MRSA252:
SAR2517
MSHR1132:
SAMSHR1132_22560
MSSA476:
SAS2318
Mu3:
SAHV_2411 (bioD)
Mu50:
SAV2427 (bioD)
MW2:
MW2350 (bioD)
RF122:
SAB2308c
ST398:
SAPIG2480 (bioD)
T0131:
SAT0131_02622 (rpmB)
TCH60:
HMPREF0772_10760 (bioD)
TW20:
SATW20_25570
USA300_TCH1516:
USA300HOU_2411 (bioD)
VC40:
SAVC_11010
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCIFKPFQTEERQDGTFPDLEVFKNECDL
N315 MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCVFKPFQTEERQDGTFPDLEVFKNECDL
NCTC8325 MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCIFKPFQTEERQDGTFPDLEVFKNECDL
Newman MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCIFKPFQTEERQDGTFPDLEVFKNECDL
USA300_FPR3757 MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCIFKPFQTEERQDGTFPDLEVFKNECDL
*********************************:**************************
COL SYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDKEFDFILIEGAGGIAVPIY
N315 SYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDKEFDFILIEGAGGIAVPIY
NCTC8325 SYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDKEFDFILIEGAGGIAVPIY
Newman SYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDKEFDFILIEGAGGIAVPIY
USA300_FPR3757 SYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDKEFDFILIEGAGGIAVPIY
************************************************************
COL EGTDDFYMTKDLINDCADCVISVLPSKLGAISDAIVHQDYVNQNVSASNFLIMNRYTDSY
N315 EGTDDFYMTKDLINDCADCVISVLPSKLGAISDAVVHQDYVNKNVSASNFLIMNRYTDSY
NCTC8325 EGTDDFYMTKDLINDCADCVISVLPSKLGAISDAIVHQDYVNQNVSASNFLIMNRYTDSY
Newman EGTDDFYMTKDLINDCADCVISVLPSKLGAISDAIVHQDYVNQNVSASNFLIMNRYTDSY
USA300_FPR3757 EGTDDFYMTKDLINDCADCVISVLPSKLGAISDAIVHQDYVNQNVSASNFLIMNRYTDSY
**********************************:*******:*****************
COL IEKDNQMTIGKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT
N315 IEKDNQITIGKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT
NCTC8325 IEKDNQMTIGKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT
Newman IEKDNQMTIGKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT
USA300_FPR3757 IEKDNQMTIGKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT
******:*****************************************