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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005982000
- symbol?: —
- synonym:
- description?: Bcr/CflA family drug resistance efflux transporter
- Bcr/CflA family drug resistance efflux transporter
- Bcr/CflA subfamily drug resistance transporter, putative
- bicyclomycin resistance protein
- drug resistance transporter Bcr/CflA subfamily protein
- multidrug effflux MFS transporter
- putative transporter protein
- bicyclomycin resistance protein TcaB
- Bcr/CflA subfamily drug resistance transporter
- Drug resistance transporter, Bcr/CflA subfamily
- drug resistance transporter, Bcr/CflA subfamily protein
- major facilitator superfamily bicyclomycin:cation symporter
- major facilitator superfamily protein (MFS)
- MFS family major facilitator transporter, bicyclomycin:cation symporter
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 6042968..6044179
- synteny block?: BlockID0047260
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2371 (tcaB)
08BA02176:
C248_2483
11819-97:
MS7_2448
6850:
RSAU_002274
71193:
ST398NM01_2486
ECT-R 2:
ECTR2_2292
ED133:
SAOV_2484
ED98:
SAAV_2500 (bcr)
HO 5096 0412:
SAEMRSA15_23340
JH1:
SaurJH1_2509
JH9:
SaurJH9_2460
JKD6008:
SAA6008_02475 (bcr)
JKD6159:
SAA6159_02332 (bcr)
LGA251:
SARLGA251_22150
M013:
M013TW_2397
MRSA252:
SAR2524
MSHR1132:
SAMSHR1132_22620
MSSA476:
SAS2326
Mu3:
SAHV_2418
Mu50:
SAV2434
MW2:
MW2358
RF122:
SAB2316
ST398:
SAPIG2486
T0131:
SAT0131_02631 (clfB)
TCH60:
HMPREF0772_10754 (bcr)
TW20:
SATW20_25630
USA300_TCH1516:
USA300HOU_2420 (bcr)
VC40:
SAVC_11045
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MQSTKTKTKHFSFLLLITLGVMTAFGPLTIDMYVPSLPKVQGDFGSTTSEIQLTLSFTMI
N315 MQSTKTKTKHFSFLLLITLGVMTAFGPLTIDMYVPSLPKVQGDFGSTTSEIQLTLSFTMI
NCTC8325 MQSTKTKTKHFSFLLLITLGVMTAFGPLTIDMYVPSLPKVQGDFGSTTSEIQLTLSFTMI
Newman MQSTKTKTKHFSFLLLITLGVMTAFGPLTIDMYVPSLPKVQGDFGSTTSEIQLTLSFTMI
USA300_FPR3757 MQSTKTKTKHFSFLLLITLGVMTAFGPLTIDMYVPSLPKVQGDFGSTTSEIQLTLSFTMI
************************************************************
COL GLALGQFIFGPLSDAFGRKRIAVSILIIFILVSGLSMFVDQLPLFLTLRFIQGLTGGGVI
N315 GLALGQFIFGPLSDAFGRKRIAVSILIIFILVSGLSMFVDQLPLFLTLRFIQGLTGGGVI
NCTC8325 GLALGQFIFGPLSDAFGRKRIAVSILIIFILVSGLSMFVDQLPLFLTLRFIQGLTGGGVI
Newman GLALGQFIFGPLSDAFGRKRIAVSILIIFILVSGLSMFVDQLPLFLTLRFIQGLTGGGVI
USA300_FPR3757 GLALGQFIFGPLSDAFGRKRIAVSILIIFILVSGLSMFVDQLPLFLTLRFIQGLTGGGVI
************************************************************
COL VIAKASAGDKFSGNALAKFLASLMVVNGIITILAPLAGGLALSVATWRSIFTILTIVALI
N315 VIAKASAGDKFSGNALAKFLASLMVVNGIITILAPLAGGLALSVATWRSIFTILTIVALI
NCTC8325 VIAKASAGDKFSGNALAKFLASLMVVNGIITILAPLAGGLALSVATWRSIFTILTIVALI
Newman VIAKASAGDKFSGNALAKFLASLMVVNGIITILAPLAGGLALSVATWRSIFTILTIVALI
USA300_FPR3757 VIAKASAGDKFSGNALAKFLASLMVVNGIITILAPLAGGLALSVATWRSIFTILTIVALI
************************************************************
COL ILIGVASQLPKTSKDELKQVNFSSVIKDFGSLLKKPAFIIPMLLQGLTYVMLFSYSSASP
N315 ILIGVASQLPKTSKDELKQVNFSSVIKDFGSLLKKPAFIIPMLLQGLTYVMLFSYSSASP
NCTC8325 ILIGVASQLPKTSKDELKQVNFSSVIKDFGSLLKKPAFIIPMLLQGLTYVMLFSYSSASP
Newman ILIGVASQLPKTSKDELKQVNFSSVIKDFGSLLKKPAFIIPMLLQGLTYVMLFSYSSASP
USA300_FPR3757 ILIGVASQLPKTSKDELKQVNFSSVIKDFGSLLKKPAFIIPMLLQGLTYVMLFSYSSASP
************************************************************
COL FITQKLYNMTPQQFSIMFAVNGVGLIIVSQVVALLVEKLHRHILLIILTIIQVVGVALII
N315 FITQKLYNMTPQQFSIMFAVNGVGLIIVSQVVALLVEKLHRHILLIILTIIQVVGVALII
NCTC8325 FITQKLYNMTPQQFSIMFAVNGVGLIIVSQVVALLVEKLHRHILLIILTIIQVVGVALII
Newman FITQKLYNMTPQQFSIMFAVNGVGLIIVSQVVALLVEKLHRHILLIILTIIQVVGVALII
USA300_FPR3757 FITQKLYNMTPQQFSIMFAVNGVGLIIVSQVVALLVEKLHRHILLIILTIIQVVGVALII
************************************************************
COL LTLTFHLPLWVLLIAFFLNVCPVTSIGPLGFTMAMEERTGGSGNASSLLGLFQFILGGAV
N315 LTLTFHLPLWVLLIAFFLNVCPVTSIGPLGFTMAMEERTGGSGNASSLLGLFQFILGGAV
NCTC8325 LTLTFHLPLWVLLIAFFLNVCPVTSIGPLGFTMAMEERTGGSGNASSLLGLFQFILGGAV
Newman LTLTFHLPLWVLLIAFFLNVCPVTSIGPLGFTMAMEERTGGSGNASSLLGLFQFILGGAV
USA300_FPR3757 LTLTFHLPLWVLLIAFFLNVCPVTSIGPLGFTMAMEERTGGSGNASSLLGLFQFILGGAV
************************************************************
COL APLVGLKGEFNTSPYMIIIFITAILLVSLQIIYFKMIKKQHVA
N315 APLVGLKGEFNTSPYMIIIFITAILLVSLQIIYFKMIKKQHVA
NCTC8325 APLVGLKGEFNTSPYMIIIFITAILLVSLQIIYFKMIKKQHVA
Newman APLVGLKGEFNTSPYMIIIFITAILLVSLQIIYFKMIKKQHVA
USA300_FPR3757 APLVGLKGEFNTSPYMIIIFITAILLVSLQIIYFKMIKKQHVA
*******************************************