PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006000000
• symbol^?: opuCA
• synonym:
• description^?: glycine/betaine ABC transporter ATP-binding protein

  descriptions from strain specific annotations:

  • glycine/betaine ABC transporter ATP-binding protein
  • amino acid ABC transporter ATP-binding protein
  • ABC transporter ATP-binding protein
  • glycine betaine/carnitine/choline ABC transporter, ATP-binding protein, putative
  • glycine betaine/carnitine/choline ABC transporter ATP-binding protein
  • glycine betaine/carnitine/choline ABC transporter opuCA
  • glycine betaine/L-proline transport ATP-binding subunit
  • OsmotiCALL import_20_25_26_pangenomey activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA
  • putative glycine betaine/carnitine/cholinetransport ATP-binding protein
  • betaine-carnitine-choline ABC transporter
  • glycine betaine/carnitine/choline ABC transporter
  • glycine betaine/carnitine/choline transport ATP-binding protein opuCA
  • glycine betaine/choline ABC superfamily ATP binding cassette transporter, ABC protein
  • glycine betaine/choline ABC transporter ATP-binding protein
  • glycine betaine/L-proline ABC transporter ATPase
  • glycine betaine/L-proline ABC transporter ATP-binding protein
  • glycine betaine/L-proline transporter ATP-binding subunit
  • glycine betaine transport ATP-binding protein
• strand^?: -
• coordinates^?: 6061557..6062789
• synteny block^?: BlockID0047440
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2453
N315:
SA2237 (opuCA)
NCTC8325:
SAOUHSC_02744
Newman:
NWMN_2347 (opuCA)
USA300_FPR3757:
SAUSA300_2393 (opuCa)
04-02981:
SA2981_2385 (opuCA)
08BA02176:
C248_2498 (opuCA)
11819-97:
MS7_2462 (proV)
6850:
RSAU_002288 (opuCA)
71193:
ST398NM01_2500
ECT-R 2:
ECTR2_2306 (proV)
ED133:
SAOV_2498c
ED98:
SAAV_2514
HO 5096 0412:
SAEMRSA15_23480 (opuCA)
JH1:
SaurJH1_2523
JH9:
SaurJH9_2475
JKD6008:
SAA6008_02490 (opuCA)
JKD6159:
SAA6159_02346 (opuCA)
LGA251:
SARLGA251_22290 (opuCA)
M013:
M013TW_2411
MRSA252:
SAR2538 (opuCA)
MSHR1132:
SAMSHR1132_22760
MSSA476:
SAS2340
Mu3:
SAHV_2432 (opuCA)
Mu50:
SAV2448 (opuCA)
MW2:
MW2372 (opuCA)
RF122:
SAB2330c (opuCA)
ST398:
SAPIG2500
T0131:
SAT0131_02647 (ffh)
TCH60:
HMPREF0772_10740 (opuCA)
TW20:
SATW20_25770 (opuCA)
USA300_TCH1516:
USA300HOU_2437
VC40:
SAVC_11115

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             --MLSIKHLTKIYSGNKKAVDDISLDIQSGEFIAFIGTSGSGKTTALRMINRMIEATEGQ
  N315            MIMLSIKHLTKIYSGNKKAVDDISLDIQSGEFIAFIGTSGSGKTTALRMINRMIEATEGQ
  NCTC8325        --MLSIKHLTKIYSGNKKAVDDISLDIQSGEFIAFIGTSGSGKTTALRMINRMIEATEGQ
  Newman          --MLSIKHLTKIYSGNKKAVDDISLDIQSGEFIAFIGTSGSGKTTALRMINRMIEATEGQ
  USA300_FPR3757  --MLSIKHLTKIYSGNKKAVDDISLDIQSGEFIAFIGTSGSGKTTALRMINRMIEATEGQ
                    **********************************************************
  
  COL             IEIDGKDVRSMNPVELRRNIGYVIQQIGLMPHMTIKENIVLVPKLLKWTKEEKDKRAKEL
  N315            IEIDGKDVRSMNPVELRRNIGYVIQQIGLMPHMTIKENIVLVPKLLKWTKEEKDKRAKEL
  NCTC8325        IEIDGKDVRSMNPVELRRNIGYVIQQIGLMPHMTIKENIVLVPKLLKWTKEEKDKRAKEL
  Newman          IEIDGKDVRSMNPVELRRNIGYVIQQIGLMPHMTIKENIVLVPKLLKWTKEEKDKRAKEL
  USA300_FPR3757  IEIDGKDVRSMNPVELRRNIGYVIQQIGLMPHMTIKENIVLVPKLLKWTKEEKDKRAKEL
                  ************************************************************
  
  COL             IKLVDLPESFLERYPAELSGGQQQRIGVVRALAAEQDIILMDEPFGALDPITRDTLQDLV
  N315            IKLVDLPESFLERYPAELSGGQQQRIGVVRALAAEQDIILMDEPFGALDPITRDTLQDLV
  NCTC8325        IKLVDLPESFLERYPAELSGGQQQRIGVVRALAAEQDIILMDEPFGALDPITRDTLQDLV
  Newman          IKLVDLPESFLERYPAELSGGQQQRIGVVRALAAEQDIILMDEPFGALDPITRDTLQDLV
  USA300_FPR3757  IKLVDLPESFLERYPAEISGGQQQRIGVVRALAAEQDIILMDEPFGALDPITRDTLQDLV
                  *****************:******************************************
  
  COL             KTLQRKLGKTFIFVTHDMDEAIKLADKICIMSEGKVVQFDTPDNILRHPANDFVRDFIGQ
  N315            KTLQRKLGKTFIFVTHDMDEAIKLADKICIMSEGKVVQFDTPDNILRHPANDFVRDFIGQ
  NCTC8325        KTLQRKLGKTFIFVTHDMDEAIKLADKICIMSEGKVVQFDTPDNILRHPANDFVRDFIGQ
  Newman          KTLQRKLGKTFIFVTHDMDEAIKLADKICIMSEGKVVQFDTPDNILRHPANDFVRDFIGQ
  USA300_FPR3757  KTLQRKLGKTFIFVTHDMDEAIKLADKICIMSEGKVVQFDTPDNILRHPANDFVRDFIGQ
                  ************************************************************
  
  COL             NRLIQDRPNDKTVEGVMIKPITIQAEATLNDAVHIMRQKRVDTIFVVDSNNHLLGFLDIE
  N315            NRLIQDRPNDKTVEGVMIKPITIQADATLNDAVHIMRQKRVDTIFVVDSNNHLLGFLDIE
  NCTC8325        NRLIQDRPNDKTVEGVMIKPITIQAEATLNDAVHIMRQKRVDTIFVVDSNNHLLGFLDIE
  Newman          NRLIQDRPNDKTVEGVMIKPITIQAEATLNDAVHIMRQKRVDTIFVVDSNNHLLGFLDIE
  USA300_FPR3757  NRLIQDRPNDKTVEGVMIKPITIQAEATLNDAVHIMRQKRVDAIFVVDSNNHLLGFLDIE
                  *************************:****************:*****************
  
  COL             DINQGIRGHKSLRDTMQQHIYTVQIDSKLQDSVRTILKRNVRNVPVVDDQQRLVGLITRA
  N315            DINQGIRGHKSLRDTMQQHIYTVQIDSKLQDSVRTILKRNVRNVPVVDDKQRLVGLITRA
  NCTC8325        DINQGIRGHKSLRDTMQQHIYTVQIDSKLQDSVRTILKRNVRNVPVVDDQQRLVGLITRA
  Newman          DINQGIRGHKSLRDTMQQHIYTVQIDSKLQDSVRTILKRNVRNVPVVDDQQRLVGLITRA
  USA300_FPR3757  DINQGIRGHKSLRDTMQQHIYTVQIDSKLQDSVRTILKRNVRNVPVVDDQQRLVGLITRA
                  *************************************************:**********
  
  COL             NVVDIVYDTIWGDSEDTVQTEHVGEDTASSKVHEQHTTNVKVRDIGDDKS
  N315            NVVDIVYDTIWGDSEDAVQTEHVGEDTVSSKMHEQHTTNVKVRDIGDDKS
  NCTC8325        NVVDIVYDTIWGDSEDTVQTEHVGEDTASSKVHEQHTTNVKVRDIGDDKS
  Newman          NVVDIVYDTIWGDSEDTVQTEHVGEDTASSKVHEQHTTNVKVRDIGDDKS
  USA300_FPR3757  NVVDIVYDTIWGDSEDTVQTEHVGEDTASSKVHEQHTTNVKVRDIGDDKS
                  ****************:**********.***:******************