PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006073000
• symbol^?: —
• synonym:
• description^?: tandem-type lipoprotein

  descriptions from strain specific annotations:

  • tandem-type lipoprotein
  • lipoprotein, putative
  • tandem lipoprotein
  • lipoprotein
  • Membrane lipoprotein
  • putative lipoprotein
  • staphylococcus tandem lipoproteins family protein
• strand^?: -
• coordinates^?: 6118331..6132694
• synteny block^?: BlockID0048140
• occurrence^?: in 76% of 33 strains

⊟Orthologs

COL:
SACOL2498
N315:
SA2275
NCTC8325:
SAOUHSC_02789
Newman:
NWMN_2385
USA300_FPR3757:
SAUSA300_2430
04-02981:
SA2981_2424
08BA02176:
C248_2544
11819-97:
—
6850:
RSAU_002326
71193:
ST398NM01_2543
ECT-R 2:
ECTR2_2344
ED133:
—
ED98:
SAAV_2554
HO 5096 0412:
SAEMRSA15_23870
JH1:
SaurJH1_2566
JH9:
SaurJH9_2514
JKD6008:
SAA6008_02523
JKD6159:
SAA6159_02382
LGA251:
SARLGA251_22680
M013:
M013TW_2449
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_2471
Mu50:
SAV2487
MW2:
—
RF122:
—
ST398:
SAPIG2543
T0131:
SAT0131_02683 (proS)
TCH60:
—
TW20:
SATW20_26090
USA300_TCH1516:
USA300HOU_2478
VC40:
SAVC_11310

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MMIHSKRLRLWLYLVLLAVFIGACGMKKEESSKDKQIKENFNKTLSLYPTKNLEDFYDKE
  N315            MMIHSRKLRLWLYLVLLAVFIGACGMKKEESSKDKQIKENFNKTLSLYPTKNLEDFYDKE
  NCTC8325        -------------------------MKKEESSKDKQIKENFNKTLSLYPTKNLEDFYDKE
  Newman          MMIHSKRLRLWLYLVLLAVFIGACGMKKEESSKDKQIKENFNKTLSLYPTKNLEDFYDKE
  USA300_FPR3757  MMIHSKRLRLWLYLVLLAVFIGACGMKKEESSKDKQIKENFNKTLSLYPTKNLEDFYDKE
                                           ***********************************
  
  COL             GFRDQEFEKGDKGTWIIHSKMTIETNGKNMESRGLVLYVDRNTRTTKGEFIVRELWEDKK
  N315            GFRDEEFEKGDKGTWIIHSKMTIETNGKNMESRGLVLYVDRNTRTTKGEFIVRELWEDKK
  NCTC8325        GFRDQEFEKGDKGTWIIHSKMTIETNGKNMESRGLVLYVDRNTRTTKGEFIVRELWEDKK
  Newman          GFRDQEFEKGDKGTWIIHSKMTIETNGKNMESRGLVLYVDRNTRTTKGEFIVRELWEDKK
  USA300_FPR3757  GFRDQEFEKGDKGTWIIHSKMTIETNGKNMESRGLVLYVDRNTRTTKGEFIVRELWEDKK
                  ****:*******************************************************
  
  COL             GYSRSKEKEYPVKMEHNKIIPTKPIADDKLRKEIENFKFFVQYGDFKDINDYKDGDISYN
  N315            GYSRSKEKEYPVKMEHNKIIPTKPIADDKLRKEIEDFKFFVQYGDFKDINDYKDGDISYN
  NCTC8325        GYSRSKEKEYPVKMEHNKIIPTKPIADDKLRKEIENFKFFVQYGDFKDINDYKDGDISYN
  Newman          GYSRSKEKEYPVKMEHNKIIPTKPIADDKLRKEIENFKFFVQYGDFKDINDYKDGDISYN
  USA300_FPR3757  GYSRSKEKEYPVKMEHNKIIPTKPIADDKLRKEIENFKFFVQYGDFKDINDYKDGDISYN
                  ***********************************:************************
  
  COL             PNVPSYSAKYQLSNDDYNVKQLRKRYDIPTKKAPKLLIKGDGDLKGSSIGHKNLEFTFIE
  N315            PNVPSYSAKYQLSNNDYNVKQLRKRYDIPTKKAPKLLLKGDGDLKGSSIGHKNLEFIFIE
  NCTC8325        PNVPSYSAKYQLSNDDYNVKQLRKRYDIPTKKAPKLLIKGDGDLKGSSIGHKNLEFTFIE
  Newman          PNVPSYSAKYQLSNDDYNVKQLRKRYDIPTKKAPKLLIKGDGDLKGSSIGHKNLEFTFIE
  USA300_FPR3757  PNVPSYSAKYQLSNDDYNVKQLRKRYDIPTKKAPKLLIKGDGDLKGSSIGHKNLEFTFIE
                  **************:**********************:****************** ***
  
  COL             NKEENIYFTDSINFKPTE
  N315            NKEENIYFTDSINFKPTE
  NCTC8325        NKEENIYFTDSINFKPTE
  Newman          NKEENIYFTDSINFKPTE
  USA300_FPR3757  NKEENIYFTDSINFKPTE
                  ******************