PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006099000
• symbol^?: —
• synonym:
• description^?: MFS transporter

  descriptions from strain specific annotations:

  • MFS transporter
  • permease
  • permease, putative
  • transporter protein
  • Major Facilitator Superfamily protein
  • major facilitator superfamily cation symporter
  • major facilitator transporter
  • MFS family major facilitator transporter, cation symporter
• strand^?: -
• coordinates^?: 6149394..6150383
• synteny block^?: BlockID0048360
• occurrence^?: in 76% of 33 strains

⊟Orthologs

COL:
SACOL2504
N315:
SA2283
NCTC8325:
SAOUHSC_02797
Newman:
NWMN_2391
USA300_FPR3757:
SAUSA300_2434
04-02981:
SA2981_2431
08BA02176:
—
11819-97:
MS7_2499
6850:
RSAU_002338
71193:
—
ECT-R 2:
ECTR2_2349
ED133:
SAOV_2540c
ED98:
SAAV_2561
HO 5096 0412:
SAEMRSA15_23940
JH1:
SaurJH1_2572
JH9:
SaurJH9_2520
JKD6008:
SAA6008_02530
JKD6159:
—
LGA251:
—
M013:
M013TW_2459
MRSA252:
—
MSHR1132:
SAMSHR1132_23160
MSSA476:
SAS2382
Mu3:
SAHV_2479
Mu50:
SAV2495
MW2:
MW2415
RF122:
—
ST398:
—
T0131:
SAT0131_02691 (nusA)
TCH60:
—
TW20:
SATW20_26150
USA300_TCH1516:
USA300HOU_2485
VC40:
SAVC_11350

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MLYLEVLKNRNFTYLLIGNFLRRSCFVLFSLQIIWFTVELTNQSSLKLSMMVMSQTLPFI
  N315            MLYLEVLKNRNFTYLLIGNFLRRSCFVLFSLQIIWFTVELTNQSSLKLSMMVMSQTLPFI
  NCTC8325        MLYLEVLKNRNFTYLLIGNFLRRSCFVLFSLQIIWFTVELTNQSSLKLSMMVMSQTLPFI
  Newman          MLYLEVLKNRNFTYLLIGNFLRRSCFVLFSLQIIWFTVELTNQSSLKLSMMVMSQTLPFI
  USA300_FPR3757  MLYLEVLKNRNFTYLLIGNFLRRSCFVLFSLQIIWFTVELTNQSSLKLSMMVMSQTLPFI
                  ************************************************************
  
  COL             IFGIFGGAYSDKHNKKKILYLSDLILSLIIIIIPLLAITSNLNYLTLLTISTAITIINCY
  N315            IFGIFGGAYSDKHNKKKILYLSDLILSLIIIIIPLLAITSNLNYLTLLTISTAITIINCY
  NCTC8325        IFGIFGGAYSDKHNKKKILYLSDLILSLIIIIIPLLAITSNLNYLTLLTISTAITIINCY
  Newman          IFGIFGGAYSDKHNKKKILYLSDLILSLIIIIIPLLAITSNLNYLTLLTISTAITIINCY
  USA300_FPR3757  IFGIFGGAYSDKHNKKKILYLSDLILSLIIIIIPLLAITSNLNYLTLLTISTAITIINCY
                  ************************************************************
  
  COL             TDPAFRAILPEIIDEEHLATSNALIDSLQRGSNIILPALIGVIVILVGNVGVFFICSILL
  N315            TDPAFRAILPEIIDEEHLATSNALIDSLQRGSNIILPALIGVIVILVGNVGVFFICSILL
  NCTC8325        TDPAFRAILPEIIDEEHLATSNALIDSLQRGSNIILPALIGVIVILVGNVGVFFICSILL
  Newman          TDPAFRAILPEIIDEEHLATSNALIDSLQRGSNIILPALIGVIVILVGNVGVFFICSILL
  USA300_FPR3757  TDPAFRAILPEIIDEEHLATSNALIDSLQRGSNIILPALIGVIVILVGNVGVFFICSILL
                  ************************************************************
  
  COL             FLGFIFNALLKYTNNNMIDRHSKEDFSETWEFLKQSKEIPFIIIIQFACILINTGLWRVV
  N315            FLGFIFNALLKYTNNNMIDRHSKEDFSETWEFLKQSKEIPFIIIIQFACILINTGLWRVA
  NCTC8325        FLGFIFNALLKYTNNNMIDRHSKEDFSETWEFLKQSKEIPFIIIIQFACILINTGLWRVV
  Newman          FLGFIFNALLKYTNNNMIDRHSKEDFSETWEFLKQSKEIPFIIIIQFACILINTGLWRVV
  USA300_FPR3757  FLGFIFNALLKYTNNNMIDRHSKEDFSETWEFLKQSKEIPFIIIIQFACILINTGLWRVV
                  ***********************************************************.
  
  COL             LPLFISNILKEGVGVYGLATSCLGIASLLMSLIMGLLSEKRLIFKFSIGVLVWGIGLSII
  N315            LPLFISNILKEGVGVYGLATSCLGIASLLMSLIMGLLSEKRLIFKFSIGVLVWGIGLSII
  NCTC8325        LPLFISNILKEGVGVYGLATSCLGIASLLMSLIMGLLSEKRLIFKFSIGVLVWGIGLSII
  Newman          LPLFISNILKEGVGVYGLATSCLGIASLLMSLIMGLLSEKRLIFKFSIGVLVWGIGLSII
  USA300_FPR3757  LPLFISNILKEGVGVYGLATSCLGIASLLMSLIMGLLSEKRLIFKFSIGVLVWGIGLSII
                  ************************************************************
  
  COL             NVFPSVAILYIGATLLGLGQSIEGLTRSVAIQIKTPNHLMGKVFSISSTSNYAADTLSLG
  N315            NVFPSVAILYIGATLVGLGQSIEGLTRSVAIQIKTPNHLMGKVFSISSTSNYAADTLS--
  NCTC8325        NVFPSVAILYIGATLLGLGQSIEGLTRSVAIQIKTPNHLMGKVFSISSTSNYAADTLSLG
  Newman          NVFPSVAILYIGATLLGLGQSIEGLTRSVAIQIKTPNHLMGKVFSISSTSNYAADTLSLG
  USA300_FPR3757  NVFPSVAILYIGATLLGLGQSIEGLTRSVAIQIKTPNHLMGKVFSISSTSNYAADTLSLG
                  ***************:******************************************  
  
  COL             LISIIIPLLSLSNIFILGGVIISILSLAGLKFVKKSM
  N315            -------------------------------------
  NCTC8325        LISIIIPLLSLSNIFILGGVIISILSLAGLKFVKKSM
  Newman          LISIIIPLLSLSNIFILGGVIISILSLAGLKFVKKSM
  USA300_FPR3757  LISIIIPLLSLSNIFILGGVIISILSLAGLKFVKKSM