From AureoWiki
Jump to navigation Jump to search

Summary[edit | edit source]

  • pan ID?: SAUPAN006150000
  • symbol?:
  • synonym:
  • description?: lantibiotic ABC transporter ATP-binding protein

      descriptions from strain specific annotations:

    • lantibiotic ABC transporter ATP-binding protein
    • ABC transporter ATP-binding protein
    • ABC superfamily ATP binding cassette transporter, ABC protein
    • ABC transporter
    • ABC transporter, ATP-binding protein
    • ABC transporter family protein
    • Lantibiotic transport ATP-binding protein
    • transporter
  • strand?: +
  • coordinates?: 6222379..6223149
  • synteny block?: BlockID0048800
  • occurrence?: in 97% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2450
    08BA02176:
    C248_2571
    11819-97:
    MS7_2519
    6850:
    71193:
    ST398NM01_2566
    ECT-R 2:
    ECTR2_2366
    ED133:
    SAOV_2558
    ED98:
    SAAV_2579
    HO 5096 0412:
    SAEMRSA15_24120
    JH1:
    SaurJH1_2589
    JH9:
    SaurJH9_2537
    JKD6008:
    SAA6008_02551
    JKD6159:
    SAA6159_02410
    LGA251:
    SARLGA251_22890
    M013:
    M013TW_2479
    MRSA252:
    SAR2594
    MSHR1132:
    SAMSHR1132_23350
    MSSA476:
    SAS2399
    Mu3:
    SAHV_2498
    Mu50:
    SAV2514
    MW2:
    MW2433
    RF122:
    SAB2388
    ST398:
    SAPIG2566
    T0131:
    SAT0131_02716 (azi)
    TCH60:
    HMPREF0772_10680
    TW20:
    SATW20_26350
    USA300_TCH1516:
    USA300HOU_2503
    VC40:
    SAVC_11445

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MDVLTIEHLTKKIGNKTILEDVSFKLKRGQIVGLVGANGAGKTTLMKVILGYSSFQSGNF
    N315            MGVLTIEHLTKKIGNKTILEDVSFKLKRGQIVGLVGANGAGKTTLMKVILGYSSFQSGNF
    NCTC8325        MDVLTIEHLTKKIGNKTILEDVSFKLKRGQIVGLVGANGAGKTTLMKVILGYSSFQSGNF
    Newman          MDVLTIEHLTKKIGNKTILEDVSFKLKRGQIVGLVGANGAGKTTLMKVILGYSSFQSGNF
    USA300_FPR3757  MDVLTIEHLTKKIGNKTILEDVSFKLKRGQIVGLVGANGAGKTTLMKVILGYSSFQSGNF
                    *.**********************************************************

    COL             NVINSKDSKSNIGALIENPGIYPFMSGYENLKLLNESKNTQDIDKIVSQLHMDEYIHKKA
    N315            NVINSKDSKSNIGALIENPGIYPFMSGYENLKLLNESKNTQDIDKIVSQLHMDEYIHKKA
    NCTC8325        NVINSKDSKSNIGALIENPGIYPFMSGYENLKLLNESKNTQDIDKIVSQLHMDEYIHKKA
    Newman          NVINSKDSKSNIGALIENPGIYPFMSGYENLKLLNESKNTQDIDKIVSQLHMDEYIHKKA
    USA300_FPR3757  NVINSKDSKSNIGALIENPGIYPFMSGYENLKLLNESKNTQDIDKIVSQLHMDEYIHKKA
                    ************************************************************

    COL             KTYSLGMKQKLGIAIAFLNKPQFIILDEPMNGLDPKAVRDVRELIVQKAQEGVTFLISSH
    N315            KTYSLGMKQKLGIAIAFLNEPQFIILDEPMNGLDPKAVRDVRELIVQKSQEGVTFLISSH
    NCTC8325        KTYSLGMKQKLGIAIAFLNKPQFIILDEPMNGLDPKAVRDVRELIVQKAQEGVTFLISSH
    Newman          KTYSLGMKQKLGIAIAFLNKPQFIILDEPMNGLDPKAVRDVRELIVQKAQEGVTFLISSH
    USA300_FPR3757  KTYSLGMKQKLGIAIAFLNKPQFIILDEPMNGLDPKAVRDVRELIVQKAQEGVTFLISSH
                    *******************:****************************:***********

    COL             ILSELVKITNSILIINKGKIVTETSEEELKQFKDNDLENVLLEIIEREDQA
    N315            ILSELVKITNSILIINKGKIVTETSEEELKQFKDNDLENVLLEIIEREDQA
    NCTC8325        ILSELVKITNSILIINKGKIVTETSEEELKQFKDNDLENVLLEIIEREDQA
    Newman          ILSELVKITNSILIINKGKIVTETSEEELKQFKDNDLENVLLEIIEREDQA
    USA300_FPR3757  ILSELVKITNSILIINKGKIVTETSEEELKQFKDNDLENVLLEIIEREDQA
                    ***************************************************