Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN006161000
- symbol?: —
- synonym:
- description?: membrane protein
- membrane protein
- membrane protein , putative
- membrane spanning protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 6233901..6234980
- synteny block?: BlockID0048860
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2453
08BA02176:
C248_2575
11819-97:
MS7_2522
6850:
RSAU_002358
71193:
ST398NM01_2569
ECT-R 2:
ECTR2_2369
ED133:
SAOV_2561
ED98:
SAAV_2582
HO 5096 0412:
SAEMRSA15_24150
JH1:
SaurJH1_2592
JH9:
SaurJH9_2540
JKD6008:
SAA6008_02555
JKD6159:
SAA6159_02413
LGA251:
SARLGA251_22920
M013:
M013TW_2488
MRSA252:
SAR2597
MSHR1132:
SAMSHR1132_23380
MSSA476:
SAS2402
Mu3:
SAHV_2501
Mu50:
SAV2517
MW2:
MW2437
RF122:
SAB2391
ST398:
SAPIG2569
T0131:
SAT0131_02719
TCH60:
HMPREF0772_10676
TW20:
SATW20_26380
USA300_TCH1516:
USA300HOU_2507
VC40:
SAVC_11460
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRILKESIIVAFAFVGVVVGAGFATGQEIFQFFTSHGAYSISGIIVTGLLITLGGMVVMH
N315 MRILKESIIVAFAFVGVVVGAGFATGQEIFQFFTSHGAYSISGIIVTGLLITLGGMVVMH
NCTC8325 ----------------------------------------------------------MH
Newman MRILKESIIVAFAFVGVVVGAGFATGQEIFQFFTSHGAYSISGIIVTGLLITLGGMVVMH
USA300_FPR3757 ----------------------------------------------------------MH
**
COL TGHHLKSRNHSDSINYFLYPSIARGFDIILTMFMLSLAIIMTAGGASTIHQSFNLPYWLS
N315 TGHHLKSRNHSDSINYFLYPSIARGFDIILTMFMLSLAIIMTAGGASTIHQSFNLPYWLS
NCTC8325 TGHHLKSRNHSDSINYFLYPSIARGFDIILTMFMLSLAIIMTAGGASTIHQSFNLPYWLS
Newman TGHHLKSRNHSDSINYFLYPSIARGFDIILTMFMLSLAIIMTAGGASTIHQSFNLPYWLS
USA300_FPR3757 TGHHLKSRNHSDSINYFLYPSIARGFDIILTMFMLSLAIIMTAGGASTIHQSFNLPYWLS
************************************************************
COL ALILVAFILATLFLKFDRLIAVLGGVTPFLIAIVIMIAVYYFTTSHLDFTAANNDAQIHK
N315 ALILVAFILATLFLKFDRLIAVLGGVTPFLIAIVIMIAVYYFTTSHLDFTAANNDAQIHK
NCTC8325 ALILVAFILATLFLKFDRLIAVLGGVTPFLIAIVIMIAVYYFTTSHLDFTAANNDAQIHK
Newman ALILVAFILATLFLKFDRLIAVLGGVTPFLIAIVIMIAVYYFTTSHLDFTAANNDAQIHK
USA300_FPR3757 ALILVAFILATLFLKFDRLIAVLGGVTPFLIAIVIMIAVYYFTTSHLDFTAANNDAQIHK
************************************************************
COL QKSLSPGWWFDAINYASLQIAAAFSFLSVMGSKVKYRDSTLYGGLIGGLIITFLLMMINL
N315 QKSLSPGWWFDAINYASLQIAAAFSFLSVMGSKVKYRDSTLYGGLIGGLIITFLLMMINL
NCTC8325 QKSLSPGWWFDAINYASLQIAAAFSFLSVMGSKVKYRDSTLYGGLIGGLIITFLLMMINL
Newman QKSLSPGWWFDAINYASLQIAAAFSFLSVMGSKVKYRDSTLYGGLIGGLIITFLLMMINL
USA300_FPR3757 QKSLSPGWWFDAINYASLQIAAAFSFLSVMGSKVKYRDSTLYGGLIGGLIITFLLMMINL
************************************************************
COL GLISQFDKIKHVDLPTLKLATQMSPSIGIIMSVIMILVIYNTVVGLMYAFASRFSVPFSR
N315 GLISQFDKIKHVDLPTLKLATQMSPSIGIIMSVIMILVIYNTVVGLMYAFASRFSVPFSR
NCTC8325 GLISQFDKIKHVDLPTLKLATQMSPSIGIIMSVIMILVIYNTVVGLMYAFASRFSVPFSR
Newman GLISQFDKIKHVDLPTLKLATQMSPSIGIIMSVIMILVIYNTVVGLMYAFASRFSVPFSR
USA300_FPR3757 GLISQFDKIKHVDLPTLKLATQMSPSIGIIMSVIMILVIYNTVVGLMYAFASRFSVPFSR
************************************************************
COL RYFIIIITMAVITYISTFIGFISLIGKVFPIMGLFGFILLIPVLYKGLIKRITGKSHID
N315 RYFIIIITMAVITYISTFIGFISLIGKVFPIMGLFGFILLIPVLYKGLIKRITGKSHID
NCTC8325 RYFIIIITMAVITYISTFIGFISLIGKVFPIMGLFGFILLIPVLYKGLIKRITGKSHID
Newman RYFIIIITMAVITYISTFIGFISLIGKVFPIMGLFGFILLIPVLYKGLIKRITGKSHID
USA300_FPR3757 RYFIIIITMAVITYISTFIGFISLIGKVFPIMGLFGFILLIPVLYKGLIKRITGKSHID
***********************************************************