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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006210000
- symbol?: clpL
- synonym:
- description?: ATP-dependent Clp protease ATP-binding subunit
- ATP-dependent Clp protease ATP-binding subunit
- ATP-dependent Clp protease
- ATP-dependent Clp protease, ATP-binding subunit ClpC
- ATP-dependent Clp protease ATP-binding subunit ClpC
- ATP-dependent Clp proteinase, ATP-binding subunit (ClpL)
- ATP-dependent Clp proteinase subunit clpL
- putative ATP-dependent Clp proteinase
- ATP-dependent Clp protease ATP-binding subunit clpL
- ATP-dependent protease ATP-binding subunit clpL
- putative ATP-dependent protease ATP-bindingsubunit ClpL
- AAA ATPase
- ATPase
- ATP-dependent Clp protease, putative
- ATP-dependent Clp proteinase chain
- ATP-dependent Clp proteinase chain clpL
- ATP-dependent proteinase chain
- chaperone ATPase
- endopeptidase Clp
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 6270264..6272385
- synteny block?: BlockID0049340
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2484 (clpL)
08BA02176:
C248_2605 (clpL)
11819-97:
MS7_2554
6850:
RSAU_002389 (clpL)
71193:
ST398NM01_2598
ECT-R 2:
ECTR2_2400
ED133:
SAOV_2592
ED98:
SAAV_2614
HO 5096 0412:
SAEMRSA15_24510 (clpL)
JH1:
SaurJH1_2624
JH9:
SaurJH9_2571
JKD6008:
SAA6008_02586
JKD6159:
SAA6159_02444
LGA251:
SARLGA251_23230 (clpL)
M013:
M013TW_2521
MRSA252:
SAR2628 (clpL)
MSHR1132:
SAMSHR1132_23680
MSSA476:
SAS2434
Mu3:
SAHV_2532 (clpL)
Mu50:
SAV2548 (clpL)
MW2:
MW2469 (clpL)
RF122:
SAB2423 (clpL)
ST398:
SAPIG2598
T0131:
SAT0131_02757
TCH60:
HMPREF0772_10643 (clpL)
TW20:
SATW20_26700 (clpL)
USA300_TCH1516:
USA300HOU_2542 (clp)
VC40:
SAVC_11620
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNNGFFNSDFDSIFRRMMKDMQGSNQVGNKKYYINGKEVSPEELAQLTQQGGNHSAEQSA
N315 MNNGFFNSDFDSIFRRMMQDMQGSNQVGNKKYYINGKEVSPEELAQLTQQGSNQSAEQSA
NCTC8325 MNNGFFNSDFDSIFRRMMKDMQGSNQVGNKKYYINGKEVSPEELAQLTQQGGNHSAEQSA
Newman MNNVFFNSDFDSIFRRMMKDMQGSNQVGNKKYYINGKEVSPEELAQLTQQGGNHSAEQSA
USA300_FPR3757 MNNGFFNSDFDSIFRRMMKDMQGSNQVGNKKYYINGKEVSPEELAQLTQQGGNHSAEQSA
*** **************:********************************.*:******
COL QAFQQAAQRQQGQQGGNGNYLEQIGRNLTQEARDGLLDPVIGRDKEIQETAEVLSRRTKN
N315 QAFQQAAQRQQGQQGGNGNYLEQIGRNLTQEARDGLLDPVIGRDKEIQETAEVLSRRTKN
NCTC8325 QAFQQAAQRQQGQQGGNGNYLEQIGRNLTQEARDGLLDPVIGRDKEIQETAEVLSRRTKN
Newman QAFQQAAQRQQGQQGGNGNYLEQIGRNLTQEARDGLLDPVIGRDKEIQETAEVLSRRTKN
USA300_FPR3757 QAFQQAAQRQQGQQGGNGNYLEQIGRNLTQEARDGLLDPVIGRDKEIQETAEVLSRRTKN
************************************************************
COL NPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISVDISSLEAGTQYRGAFEENIQ
N315 NPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISVDISSLEAGTQYRGAFEENIQ
NCTC8325 NPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISVDISSLEAGTQYRGAFEENIQ
Newman NPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISVDISSLEAGTQYRGAFEENIQ
USA300_FPR3757 NPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISVDISSLEAGTQYRGAFEENIQ
************************************************************
COL KLIEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDE
N315 KLIEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDE
NCTC8325 KLIEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDE
Newman KLIEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDE
USA300_FPR3757 KLIEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDE
************************************************************
COL YRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLSI
N315 YRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLSI
NCTC8325 YRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLSI
Newman YRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLSI
USA300_FPR3757 YRNNILKDSALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLSI
********:***************************************************
COL QYIPQRLLPDKAIDVLDITAAHLSAQSPAVDKVETEKRISELENDKRKAVSAEEYKKADD
N315 QYIPQRLLPDKAIDVLDITAAHLSAQSPAVDKVETEKRISELENDKRKAVSAEEYKKADD
NCTC8325 QYIPQRLLPDKAIDVLDITAAHLSAQSPAVDKVETEKRISELENDKRKAVSAEEYKKADD
Newman QYIPQRLLPDKAIDVLDITAAHLSAQSPAVDKVETEKRISELENDKRKAVSAEEYKKADD
USA300_FPR3757 QYIPQRLLPDKAIDVLDITAAHLSAQSPAVDKVETEKRISELENDKRKAVSAEEYKKADD
************************************************************
COL IQNEIKSLQDKLENSNGEHTAVATVHDISDTIQRLTGIPVSQMDDNDIERLKNISNRLRS
N315 IQNEIKSLQDKLENSNGEHTAVATVHDISDTIQRLTGIPVSQMDDNDIERLKNISNRLRS
NCTC8325 IQNEIKSLQDKLENSNGEHTAVATVHDISDTIQRLTGIPVSQMDDNDIERLKNISNRLRS
Newman IQNEIKSLQDKLENSNGEHTAVATVHDISDTIQRLTGIPVSQMDDNDIERLKNISNRLRS
USA300_FPR3757 IQNEIKSLQDKLENSNGEHTAVATVHDISDTIQRLTGIPVSQMDDNDIERLKNISNRLRS
************************************************************
COL KIIGQDQAVEMVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAIDLFGNKDA
N315 KIIGQDQAVEMVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAIDLFGNKDA
NCTC8325 KIIGQDQAVEMVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAIDLFGNKDA
Newman KIIGQDQAVEMVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAIDLFGNKDA
USA300_FPR3757 KIIGQDQAVEMVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAIDLFGNKDA
************************************************************
COL LIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQIL
N315 LIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQIL
NCTC8325 LIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQIL
Newman LIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQIL
USA300_FPR3757 LIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQIL
************************************************************
COL TLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAGFGNGNDAEEKDIMHEMKKFFRPEFLN
N315 TLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAGFGNGNDAEEKDIMHEMKKFFRPEFLN
NCTC8325 TLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAGFGNGNDAEEKDIMHEMKKFFRPEFLN
Newman TLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAGFGNGNDAEEKDIMHEMKKFFRPEFLN
USA300_FPR3757 TLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAGFGNGNDAEEKDIMHEMKKFFRPEFLN
************************************************************
COL RFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDVSQDAKDWLIEEGYDEELGAR
N315 RFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDVSQDAKDWLIEEGYDEELGAR
NCTC8325 RFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDVSQDAKDWLIEEGYDEELGAR
Newman RFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDVSQDAKDWLIEEGYDEELGAR
USA300_FPR3757 RFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDVSQDAKDWLIEEGYDEELGAR
************************************************************
COL PLRRIVEQQVRDKITDYYLDHTDVKHVDIDVEDNELVVKGK
N315 PLRRIVEQQVRDKITDYYLDHTDVKHVDIDVEDNELVVKGK
NCTC8325 PLRRIVEQQVRDKITDYYLDHTDVKHVDIDVEDNELVVKGK
Newman PLRRIVEQQVRDKITDYYLDHTDVKHVDIDVEDNELVVKGK
USA300_FPR3757 PLRRIVEQQVRDKITDYYLDHTDVKHVDIDVEDNELVVKGK
*****************************************