PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006230000
• symbol^?: —
• synonym:
• description^?: CHAP domain-containing protein

  descriptions from strain specific annotations:

  • CHAP domain-containing protein
  • LysM domain-containing protein
  • secretory antigen precursor SsaA
  • secretory antigen precursor SsaA1, putative
  • secretory antigen precursor SsaA-like protein
  • staphyloxanthin biosynthesis protein
  • Staphylococcal secretory antigen ssaA1
  • secretory antigen ssaA2
  • staphylococcal secretory antigen ssaA
• strand^?: -
• coordinates^?: 6294429..6295223
• synteny block^?: BlockID0049540
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2581
N315:
SA2353
NCTC8325:
SAOUHSC_02883
Newman:
NWMN_2466 (oatA)
USA300_FPR3757:
SAUSA300_2503
04-02981:
SA2981_2503 (ssaA)
08BA02176:
C248_2624 (ssaA)
11819-97:
MS7_2573
6850:
RSAU_002407 (ssaA1)
71193:
ST398NM01_2617
ECT-R 2:
ECTR2_2419
ED133:
SAOV_2611c
ED98:
SAAV_2632
HO 5096 0412:
SAEMRSA15_24690 (ssaA)
JH1:
SaurJH1_2642
JH9:
SaurJH9_2588
JKD6008:
SAA6008_02605
JKD6159:
SAA6159_02462
LGA251:
SARLGA251_23410 (ssaA)
M013:
M013TW_2540
MRSA252:
SAR2648 (ssaA)
MSHR1132:
SAMSHR1132_23820
MSSA476:
SAS2452
Mu3:
SAHV_2550
Mu50:
SAV2566
MW2:
MW2487
RF122:
SAB2439c (ssaA)
ST398:
SAPIG2617
T0131:
SAT0131_02777
TCH60:
HMPREF0772_10623 (ssaA)
TW20:
SATW20_26880 (ssaA)
USA300_TCH1516:
USA300HOU_2561
VC40:
SAVC_11710

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKKIVTATIATAGLATIAFAGHDAQAAEQNNNGYNSNDAQSYSYTYTIDAQGNYHYTWTG
  N315            MKKIVTATIATAGLATIAFAGHDAQAAEQNNNGYNSNDAQSYSYTYTIDAQGNYHYTWTG
  NCTC8325        MKKIVTATIATAGLATIAFAGHDAQAAEQNNNGYNSNDAQSYSYTYTIDAQGNYHYTWTG
  Newman          MKKIVTATIATAGLATIAFAGHDAQAAEQNNNGYNSNDAQSYSYTYTIDAQGNYHYTWTG
  USA300_FPR3757  MKKIVTATIATAGLATIAFAGHDAQAAEQNNNGYNSNDAQSYSYTYTIDAQGNYHYTWTG
                  ************************************************************
  
  COL             NWNPSQLTQNNTYYYNNYNTYSYNNASYNNYYNHSYQYNNYTNNSQTATNNYYTGGSGAS
  N315            NWNPSQLTQNNTYYYNNYNTYSYNNASYNNYYNHSYQYNNYTNNSQTATNNYYTGGSGAS
  NCTC8325        NWNPSQLTQNNTYYYNNYNTYSYNNASYNNYYNHSYQYNNYTNNSQTATNNYYTGGSGAS
  Newman          NWNPSQLTQNNTYYYNNYNTYSYNNASYNNYYNHSYQYNNYTNNSQTATNNYYTGGSGAS
  USA300_FPR3757  NWNPSQLTQNNTYYYNNYNTYSYNNASYNNYYNHSYQYNNYTNNSQTATNNYYTGGSGAS
                  ************************************************************
  
  COL             YSTTSNNVHVTTTAAPSSNGRSISNGYASGSNLYTSGQCTYYVFDRVGGKIGSTWGNASN
  N315            YSTTSNNVHVTTTAAPSSNGRSISNGYASGSNLYTSGQCTYYVFDRVGGKIGSTWGNASN
  NCTC8325        YSTTSNNVHVTTTAAPSSNGRSISNGYASGSNLYTSGQCTYYVFDRVGGKIGSTWGNASN
  Newman          YSTTSNNVHVTTTAAPSSNGRSISNGYASGSNLYTSGQCTYYVFDRVGGKIGSTWGNASN
  USA300_FPR3757  YSTTSNNVHVTTTAAPSSNGRSISNGYASGSNLYTSGQCTYYVFDRVGGKIGSTWGNASN
                  ************************************************************
  
  COL             WANAAASSGYTVNNTPKVGAIMQTTQGYYGHVAYVEGVNSNGSVRVSEMNYGHGAGVVTS
  N315            WANAAASSGYTVNNTPKVGAIMQTTQGYYGHVAYVEGVNSNGSVRVSEMNYGHGAGVVTS
  NCTC8325        WANAAASSGYTVNNTPKVGAIMQTTQGYYGHVAYVEGVNSNGSVRVSEMNYGHGAGVVTS
  Newman          WANAAASSGYTVNNTPKVGAIMQTTQGYYGHVAYVEGVNSNGSVRVSEMNYGHGAGVVTS
  USA300_FPR3757  WANAAASSGYTVNNTPKVGAIMQTTQGYYGHVAYVEGVNSNGSVRVSEMNYGHGAGVVTS
                  ************************************************************
  
  COL             RTISANQAGSYNFIH
  N315            RTISANQAGSYNFIH
  NCTC8325        RTISANQAGSYNFIH
  Newman          RTISANQAGSYNFIH
  USA300_FPR3757  RTISANQAGSYNFIH
                  ***************