PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006442000
• symbol^?: —
• synonym:
• description^?: DNA-directed RNA polymerase subunit delta

  descriptions from strain specific annotations:

  • DNA-directed RNA polymerase subunit delta
  • S-adenosyl-l-methionine hydroxide adenosyltransferase domain protein
  • S-adenosyl-l-methionine hydroxide adenosyltransferase family protein
• strand^?: -
• coordinates^?: 6483001..6483837
• synteny block^?: BlockID0051490
• occurrence^?: in 82% of 33 strains

⊟Orthologs

COL:
SACOL2710
N315:
SA2478
NCTC8325:
SAOUHSC_03021
Newman:
NWMN_2584
USA300_FPR3757:
SAUSA300_2619
04-02981:
SA2981_2626
08BA02176:
—
11819-97:
MS7_2691
6850:
RSAU_002531
71193:
—
ECT-R 2:
ECTR2_2539
ED133:
—
ED98:
SAAV_2760
HO 5096 0412:
—
JH1:
SaurJH1_2767
JH9:
SaurJH9_2710
JKD6008:
SAA6008_02745
JKD6159:
SAA6159_02583
LGA251:
—
M013:
M013TW_2669
MRSA252:
SAR2768
MSHR1132:
SAMSHR1132_25140
MSSA476:
SAS2571
Mu3:
SAHV_2670
Mu50:
SAV2686
MW2:
MW2605
RF122:
SAB2562c
ST398:
—
T0131:
SAT0131_02965
TCH60:
HMPREF0772_10500
TW20:
SATW20_28230
USA300_TCH1516:
USA300HOU_2688
VC40:
SAVC_12305

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MGNYLVLQSDFGLSDGAVSAMYGVAYTVSDDIRVENLTHDIPPYDIWVASYRLYQTVKYW
  N315            MGNYLVLQSDFGLSDGAVSAMYGVAYTVSDDIRVENLTHDIPPYDIWVASYRLYQTVKYW
  NCTC8325        MGNYLVLQSDFGLSDGAVSAMYGVAYTVSDDIRVENLTHDIPPYDIWVASYRLYQTVKYW
  Newman          MGNYLVLQSDFGLSDGAVSAMYGVAYTVSDDIRVENLTHDIPPYDIWVASYRLYQTVKYW
  USA300_FPR3757  MGNYLVLQSDFGLSDGAVSAMYGVAYTVSDDIRVENLTHDIPPYDIWVASYRLYQTVKYW
                  ************************************************************
  
  COL             PKGTVFVSVVDPGVGSDRRSIACLTYSGHYIITPDNGSLSHIKHYEGIKKVIEIDEVKSR
  N315            PKGTVFVSVVDPGVGSDRRSIACLTYSGHYIITPDNGSLSHIKHYEGIKKVIEIDEVKSR
  NCTC8325        PKGTVFVSVVDPGVGSDRRSIACLTYSGHYIITPDNGSLSHIKHYEGIKKVIEIDEVKSR
  Newman          PKGTVFVSVVDPGVGSDRRSIACLTYSGHYIITPDNGSLSHIKHYEGIKKVIEIDEVKSR
  USA300_FPR3757  PKGTVFVSVVDPGVGSDRRSIACLTYSGHYIITPDNGSLSHIKHYEGIKKVIEIDEVKSR
                  ************************************************************
  
  COL             LPHSEESHTFHGRDVYAYNGARLAANKIAFERLGQAINVDSIEALEIREVTKNEDSVTGS
  N315            LPHSEESHTFHGRDVYAYNGARLAANKIAFERLGQAINVDSIEALEIREATKNEDSVTGS
  NCTC8325        LPHSEESHTFHGRDVYAYNGARLAANKIAFERLGQAINVDSIEALEIREVTKNEDSVTGS
  Newman          LPHSEESHTFHGRDVYAYNGARLAANKIAFERLGQAINVDSIEALEIREVTKNEDSVTGS
  USA300_FPR3757  LPHSEESHTFHGRDVYAYNGARLAANKIAFERLGQAINVDSIEALEIREVTKNEDSVTGS
                  *************************************************.**********
  
  COL             IDILDIRFGSLWTNIPLAFLKSLEIVHGNNLVVTIYHQDKKVYQNIIKFARSFADVNVGE
  N315            IDILDIRFGSLWTNIPLAFLKSLEIVHGNNLVVTIYHQDKKVYQNIIKFARSFADVNVGE
  NCTC8325        IDILDIRFGSLWTNIPLAFLKSLEIVHGNNLVVTIYHQDKKVYQNIIKFARSFADVNVGE
  Newman          IDILDIRFGSLWTNIPLAFLKSLEIVHGNNLVVTIYHQDKKVYQNIIKFARSFADVNVGE
  USA300_FPR3757  IDILDIRFGSLWTNIPLAFLKSLEIVHGNNLVVTIYHQDKKVYQNIIKFARSFADVNVGE
                  ************************************************************
  
  COL             PLVYVNSLVNIGVAVNQDSFSDLYHIGTGNDWTIHLSKAPSI
  N315            PLVYVNSLVNIGVAVNQDSFSDLYHIGTGNDWTIHLSKAPSI
  NCTC8325        PLVYVNSLVNIGVAVNQDSFSDLYHIGTGNDWTIHLSKAPSI
  Newman          PLVYVNSLVNIGVAVNQDSFSDLYHIGTGNDWTIHLSKAPSI
  USA300_FPR3757  PLVYVNSLVNIGVAVNQDSFSDLYHIGTGNDWTIHLSKAPSI
                  ******************************************