PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006465000
• symbol^?: vraD
• synonym:
• description^?: ABC transporter ATP-binding protein

  descriptions from strain specific annotations:

  • ABC transporter ATP-binding protein
  • ABC transporter ATP-binding protein, involved in vancomycin resistance
  • ABC transporter ATP-binding protein VraD
  • peptide resistance ABC transporter ATP-binding subunit VraD
  • bacitracin export ATP-binding protein bceA
  • ABC superfamily ATP binding cassette transporter, ABC protein
  • ABC transporter family protein
  • Bacitracin transport ATP-binding protein
  • SalX, ABC-type antimicrobial peptide transport system, involved in vancomycin resistance
• strand^?: +
• coordinates^?: 6507212..6507970
• synteny block^?: BlockID0051720
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2724
N315:
SA2492 (vraD)
NCTC8325:
SAOUHSC_03036
Newman:
NWMN_2598 (vraD)
USA300_FPR3757:
SAUSA300_2633
04-02981:
SA2981_2640 (vraD)
08BA02176:
C248_2767 (vraD)
11819-97:
MS7_2706
6850:
RSAU_002546 (vraD)
71193:
ST398NM01_2747
ECT-R 2:
ECTR2_2553
ED133:
SAOV_2744
ED98:
SAAV_2773
HO 5096 0412:
SAEMRSA15_26000 (vraD)
JH1:
SaurJH1_2781
JH9:
SaurJH9_2724
JKD6008:
SAA6008_02758 (vraD)
JKD6159:
SAA6159_02595 (vraD)
LGA251:
SARLGA251_24670 (vraD)
M013:
M013TW_2684
MRSA252:
SAR2781 (vraD)
MSHR1132:
SAMSHR1132_25290
MSSA476:
SAS2585
Mu3:
SAHV_2685 (vraD)
Mu50:
SAV2701 (vraD)
MW2:
MW2620 (vraD)
RF122:
SAB2578 (vraD)
ST398:
SAPIG2747
T0131:
SAT0131_02978
TCH60:
HMPREF0772_10486
TW20:
SATW20_28360 (vraD)
USA300_TCH1516:
USA300HOU_2703
VC40:
SAVC_12375

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTILSVQHVSKTYGKKHTFQALKDINFDIQKGEFVAIMGPSGSGKTTLLNVLSSIDQISS
  N315            MTILSVQHVSKTYGKKHTFQALKDINFDIQKGEFVAIMGPSGSGKTTLLNVLSSIDQISS
  NCTC8325        MTILSVQHVSKTYGKKHTFQALKDINFDIQKGEFVAIMGPSGSGKTTLLNVLSSIDQISS
  Newman          MTILSVQHVSKTYGKKHTFQALKDINFDIQKGEFVAIMGPSGSGKTTLLNVLSSIDQISS
  USA300_FPR3757  MTILSVQHVSKTYGKKHTFQALKDINFDIQKGEFVAIMGPSGSGKTTLLNVLSSIDQISS
                  ************************************************************
  
  COL             GSVIANGQELNKLNQKALAKFRKESLGFIFQDYSILPTLTVKENIMLPLSVQKMSKATME
  N315            GSVIANGQELNKLNQKALAKFRKESLGFIFQDYSILPTLTVKENIMLPLSVQKMSKATME
  NCTC8325        GSVIANGQELNKLNQKALAKFRKESLGFIFQDYSILPTLTVKENIMLPLSVQKMSKATME
  Newman          GSVIANGQELNKLNQKALAKFRKESLGFIFQDYSILPTLTVKENIMLPLSVQKMSKATME
  USA300_FPR3757  GSVIANGQELNKLNQKALAKFRKESLGFIFQDYSILPTLTVKENIMLPLSVQKMSKATME
                  ************************************************************
  
  COL             ENYKAITTALGIYDLGNKYPSELSGGQQQRTAAARAFVHKPQIIFADEPTGALDSKSAND
  N315            ENYKAITTALGIYDLGNKYPSELSGGQQQRTAAARAFVHKPQIIFADEPTGALDSKSAND
  NCTC8325        ENYKAITTALGIYDLGNKYPSELSGGQQQRTAAARAFVHKPQIIFADEPTGALDSKSAND
  Newman          ENYKAITTALGIYDLGNKYPSELSGGQQQRTAAARAFVHKPQIIFADEPTGALDSKSAND
  USA300_FPR3757  ENYKAITTALGIYDLGNKYPSELSGGQQQRTAAARAFVHKPQIIFADEPTGALDSKSAND
                  ************************************************************
  
  COL             LLQRLEEMNKSFDTTIVMVTHDPVAASFAERVIMLKDGQIHTQLYQEGRSKQAFYEDIVH
  N315            LLQRLEEMNKSFDTTIVMVTHDPVAASFAERVIMLKDGQIHTQLYQEGRSKQAFYEDIVH
  NCTC8325        LLQRLEEMNKSFDTTIVMVTHDPVAASFAERVIMLKDGQIHTQLYQEGRSKQAFYEDIVH
  Newman          LLQRLEEMNKSFDTTIVMVTHDPVAASFAERVIMLKDGQIHTQLYQEGRSKQAFYEDIVH
  USA300_FPR3757  LLQRLEEMNKSFDTTIVMVTHDPVAASFAERVIMLKDGQIHTQLYQEGRSKQAFYEDIVH
                  ************************************************************
  
  COL             LQSVLGGVSNDI
  N315            LQSVLGGVSNDI
  NCTC8325        LQSVLGGVSNDI
  Newman          LQSVLGGVSNDI
  USA300_FPR3757  LQSVLGGVSNDI
                  ************