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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006487000
- symbol?: gidB
- synonym:
- description?: 16S rRNA methyltransferase GidB
- 16S rRNA methyltransferase GidB
- ribosomal RNA small subunit methyltransferase G
- 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
- 16S ribosomal RNA small subunit methyltransferase G RsmG (GidB)
- glucose-inhibited division protein B
- Methyltransferase
- putative glucose inhibited division protein B
- rRNA small subunit methyltransferase, glucoseinhibited division protein GidB
- rRNA small subunit methyltransferase G
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6521329..6522048
- synteny block?: BlockID0051940
- occurrence?: in 100% of 34 strains
rsmG (gidB) : ribosome small subunit methyltransferase G [1]
Ribosome small subunit methyltransferase G (alt: ribosome small subunit nucleobase methyltransferase G, 16S rRNA guanosine (535)-N-(7)-methyltransferase) attaches a methyl group to the guanosine nucleobase at the 7-position of residue 535 in 16S ribosomal RNA (S. aureus numbering; guanosine 527 by E. coli numbering).
- 16S rRNA : G (535) → m7G (535)
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2649 (gidB)
08BA02176:
C248_2775 (gidB)
11819-97:
MS7_2714 (gidB)
6850:
RSAU_002558 (rsmG)
71193:
ST398NM01_2755
ECT-R 2:
ECTR2_2561 (gidB)
ED133:
SAOV_2751c
ED98:
SAAV_2781 (gidB)
HO 5096 0412:
SAEMRSA15_26080 (gidB)
JH1:
SaurJH1_2789 (gidB)
JH9:
SaurJH9_2732 (gidB)
JKD6008:
SAA6008_02771 (gidB)
JKD6159:
SAA6159_02603 (gidB)
JSNZ:
JSNZ_002697 (rsmG)
LGA251:
SARLGA251_24740 (gidB)
M013:
M013TW_2696
MRSA252:
SAR2796 (gidB)
MSHR1132:
SAMSHR1132_25370
MSSA476:
SAS2592 (gidB)
Mu3:
SAHV_2694 (gidB)
Mu50:
SAV2710 (gidB)
MW2:
MW2628 (gidB)
RF122:
SAB2586c (gidB)
ST398:
SAPIG2755 (gidB)
T0131:
SAT0131_02992 (recU)
TCH60:
HMPREF0772_10472 (gidB)
TW20:
SATW20_28480 (gidB)
USA300_TCH1516:
USA300HOU_2713 (gidB)
VC40:
SAVC_12440 (gidB)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTVEWLAEQLKEHNIQLTETQKQQFQTYYRLLVEWNEKMNLTSITDEHDVYLKHFYDSIA
N315 MTVEWLAEQLKEHNIELTETQKQQFQTYYRLLVEWNEKMNLTSITDEHDVYLKHFYDSIA
NCTC8325 MTVEWLAEQLKEHNIQLTETQKQQFQTYYRLLVEWNEKMNLTSITDEHDVYLKHFYDSIA
Newman MTVEWLAEQLKEHNIQLTETQKQQFQTYYRLLVEWNEKMNLTSITDEHDVYLKHFYDSIA
USA300_FPR3757 MTVEWLAEQLKEHNIQLTETQKQQFQTYYRLLVEWNEKMNLTSITDEHDVYLKHFYDSIA
***************:********************************************
COL PSFYFDFNQPISICDVGAGAGFPSIPLKIMFPQLKVTIVDSLNKRIQFLNHLASELQLQD
N315 PSFYFDFNQPISICDVGAGAGFPSIPLKIMFPQLKVTIVDSLNKRIQFLNHLASELQLQD
NCTC8325 PSFYFDFNQPISICDVGAGAGFPSIPLKIMFPQLKVTIVDSLNKRIQFLNHLASELQLQD
Newman PSFYFDFNQPISICDVGAGAGFPSIPLKIMFPQLKVTIVDSLNKRIQFLNHLASELQLQD
USA300_FPR3757 PSFYFDFNQPISICDVGAGAGFPSIPLKIMFPQLKVTIVDSLNKRIQFLNHLASELQLQD
************************************************************
COL VSFIHDRAETFGKGVYRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEEL
N315 VSFIHDRAETFGKGVYRESYDVVTARAVARLSVLSELCLPLIKKGGQFVALKSSKGEEEL
NCTC8325 VSFIHDRAETFGKGVYRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEEL
Newman VSFIHDRAETFGKGVYRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEEL
USA300_FPR3757 VSFIHDRAETFGKGVYRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEEL
*****************************************:******************
COL EEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPLLEK
N315 EEAKFAISVLGGNVTETHTFKLPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPLLEK
NCTC8325 EEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPLLEK
Newman EEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPLLEK
USA300_FPR3757 EEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPLLEK
********************:**************************************
- ↑ Tatsuhiko Kyuma, Hayato Kizaki, Hiroki Ryuno, Kazuhisa Sekimizu, Chikara Kaito
16S rRNA methyltransferase KsgA contributes to oxidative stress resistance and virulence in Staphylococcus aureus.
Biochimie: 2015, 119;166-74
[PubMed:26545800] [WorldCat.org] [DOI] (I p)Alexander Golubev, Bulat Fatkhullin, Iskander Khusainov, Lasse Jenner, Azat Gabdulkhakov, Shamil Validov, Gulnara Yusupova, Marat Yusupov, Konstantin Usachev
Cryo-EM structure of the ribosome functional complex of the human pathogen Staphylococcus aureus at 3.2 Å resolution.
FEBS Lett: 2020, 594(21);3551-3567
[PubMed:32852796] [WorldCat.org] [DOI] (I p)Adrián González-López, Daniel S D Larsson, Ravi Kiran Koripella, Brett N Cain, Martin Garcia Chavez, Paul J Hergenrother, Suparna Sanyal, Maria Selmer
Structures of the Staphylococcus aureus ribosome inhibited by fusidic acid and fusidic acid cyclopentane.
Sci Rep: 2024, 14(1);14253
[PubMed:38902339] [WorldCat.org] [DOI] (I e)