PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006491000
• symbol^?: rpmH
• synonym:
• description^?: 50S ribosomal protein L34

  descriptions from strain specific annotations:

  • 50S ribosomal protein L34
  • rpmH
• strand^?: -
• coordinates^?: 6526056..6526193
• synteny block^?: BlockID0051980
• occurrence^?: in 97% of 33 strains

⊟Orthologs

COL:
SACOL2740 (rpmH)
N315:
SAS093 (rpmH)
NCTC8325:
SAOUHSC_03055 (rpmH)
Newman:
NWMN_2614 (rpmH)
USA300_FPR3757:
SAUSA300_2648 (rpmH)
04-02981:
SA2981_2653 (rpmH)
08BA02176:
C248_2779
11819-97:
MS7_2718 (rpmH)
6850:
RSAU_002562 (rpmH)
71193:
ST398NM01_2759
ECT-R 2:
ECTR2_2565 (rpmH)
ED133:
SAOV_2754c
ED98:
SAAV_2785 (rpmH)
HO 5096 0412:
SAEMRSA15_26120 (rpmH)
JH1:
SaurJH1_2793 (rpmH)
JH9:
—
JKD6008:
SAA6008_02775 (rpmH)
JKD6159:
SAA6159_02607 (rpmH)
LGA251:
SARLGA251_24780 (rpmH)
M013:
M013TW_2700
MRSA252:
SAR2800 (rpmH)
MSHR1132:
SAMSHR1132_25410
MSSA476:
SAS2596 (rpmH)
Mu3:
SAHV_2698 (rpmH)
Mu50:
SAV2714 (rpmH)
MW2:
MW2632 (rpmH)
RF122:
SAB2590c (rpmH)
ST398:
SAPIG2759 (rpmH)
T0131:
SAT0131_02996 (dnaD)
TCH60:
HMPREF0772_10468 (rpmH)
TW20:
SATW20_28520 (rpmH)
USA300_TCH1516:
USA300HOU_2717 (rpmH)
VC40:
SAVC_12460 (rpmH)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA
  N315            MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA
  NCTC8325        MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA
  Newman          MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA
  USA300_FPR3757  MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA
                  *********************************************