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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_0043
- pan locus tag?: SAUPAN000663000
- symbol: SAUSA300_0043
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_0043
- symbol: SAUSA300_0043
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 54981..55154
- length: 174
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3915057 NCBI
- RefSeq: YP_492763 NCBI
- BioCyc:
- MicrobesOnline: 1291558 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121GTGCCACACGGCAAACTTTTAGAAACAGATTTACCTTTCAATAGAAACGATGTTATTTAT
GTAGACTGTCAGTCTGGCATTAGAAGTTCTATAGCTATTGGTATTTTAGAACACAAAGGT
TATCACAACATTATTAATGTAAACGAAGGTTACAAAGATATATACCTTTCTTAA60
120
174
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_0043
- symbol: SAUSA300_0043
- description: hypothetical protein
- length: 57
- theoretical pI: 6.2209
- theoretical MW: 6475.31
- GRAVY: -0.236842
⊟Function[edit | edit source]
- TIGRFAM: phage shock operon rhodanese PspE (TIGR02981; EC 2.8.1.1; HMM-score: 19.7)
- TheSEED :
- Polysulfide binding protein
- Zn-dependent hydroxyacylglutathione hydrolase
- PFAM: Phosphatase (CL0031) Rhodanese; Rhodanese-like domain (PF00581; HMM-score: 26.3)and 1 moreSH3 (CL0010) SH3_9; Variant SH3 domain (PF14604; HMM-score: 12.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.7704
- Cytoplasmic Membrane Score: 0.0142
- Cell wall & surface Score: 0.0046
- Extracellular Score: 0.2108
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.014562
- TAT(Tat/SPI): 0.001132
- LIPO(Sec/SPII): 0.003227
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MPHGKLLETDLPFNRNDVIYVDCQSGIRSSIAIGILEHKGYHNIINVNEGYKDIYLS
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.