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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0564 [new locus tag: SAUSA300_RS03020 ]
  • pan locus tag?: SAUPAN002360000
  • symbol: SAUSA300_0564
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_0564 [new locus tag: SAUSA300_RS03020 ]
  • symbol: SAUSA300_0564
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 638953..639333
  • length: 381
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGTTGAATAGAGAAACTTTAATAGCACGAATTGAGCAAGAATTAGTACAAGCAGAGCAG
    GCACAGCATGACCATGACTTTGAAAAACATATGTATGCCATACATATATTAACATCTTTA
    TATGCTTCAACATCAAATACACCACATATTGGTGAACAACAAATGAATCGTCGTATTGCT
    AACCATAATCAAATGCCACAATCACAAATAACGCAGCCAACTCATCAAGTGACAGTTGCT
    GAAATTGAAGCGATGGGTGGTAAAGTAAATACGCATTCAGCACATCATCATAATAAGTCA
    TATTCACAACCTTCAAACCAACAACAAAGATTAGCGACAGATGATGACATTGGCAATGGT
    GAATCCATATTTGATTTTTAA
    60
    120
    180
    240
    300
    360
    381

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_0564 [new locus tag: SAUSA300_RS03020 ]
  • symbol: SAUSA300_0564
  • description: hypothetical protein
  • length: 126
  • theoretical pI: 6.27098
  • theoretical MW: 14365.7
  • GRAVY: -0.88254

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01108029: hypothetical protein
  • PFAM:
    no clan defined DUF5327; Family of unknown function (DUF5327) (PF17261; HMM-score: 43.6)
    and 2 more
    Cupin (CL0029) KduI; KduI/IolB family (PF04962; HMM-score: 13.8)
    no clan defined DUF5867; Family of unknown function (DUF5867) (PF19185; HMM-score: 13.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.892
    • Cytoplasmic Membrane Score: 0.0852
    • Cell wall & surface Score: 0.0006
    • Extracellular Score: 0.0222
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00839
    • TAT(Tat/SPI): 0.005361
    • LIPO(Sec/SPII): 0.001464
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLNRETLIARIEQELVQAEQAQHDHDFEKHMYAIHILTSLYASTSNTPHIGEQQMNRRIANHNQMPQSQITQPTHQVTVAEIEAMGGKVNTHSAHHHNKSYSQPSNQQQRLATDDDIGNGESIFDF

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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