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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_0913 [new locus tag: SAUSA300_RS04910 ]
- pan locus tag?: SAUPAN003186000
- symbol: SAUSA300_0913
- pan gene symbol?: cozEa
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_0913 [new locus tag: SAUSA300_RS04910 ]
- symbol: SAUSA300_0913
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1001133..1002218
- length: 1086
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3915174 NCBI
- RefSeq: YP_493613 NCBI
- BioCyc: see SAUSA300_RS04910
- MicrobesOnline: 1292428 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1081ATGTTAAACAAGGTTTGGTTCCGAACTGGCATCGCTCTGATTATGCTGTTCATTCTCATC
AAACTATTTATGGAAGTGCACGAAGTATTTACTCCAATAGCTACAATCATCGGTTCTGTA
TTTCTTCCATTTTTAATTAGTGGTTTTTTATTTTATATCTGTCTACCTTTTCAAAACTTA
CTTGAAAAAGTCGGTTTTCCAAGATGGGCTAGTATAACAACAATCATGTTAGCTTTGTTT
GCTATTATCGGCTTAATTGTTGCGTTTGTTGCACCAATCATCATTTCAAATATCAACAAT
TTAATTAGTCAGACACCTGCCCTACAAAAAGAAGCAGAGCAAATTATTAAATTCGCACTA
GCTCAAATGGATAAATTACCTGAAGATGTAACAAGTAGAATTACAAATATGGTTAAATCA
ATGGGTGATGGCGTTACTAATATTTTATCTAATTCATTACAGTACATTACATCATTAATT
TCAACCATCTTCTTATTGATTATGGTTCCATTCTTCTTAATTTATATGTTAAAAGACCAT
GAAAAATTTATCCCAGCTGTTGCTAAATTTTTCAAAGGTGAACGTAAAGTATTTTTCGTA
GATTTATTAACTGATTTAAACTTTACATTAAAATCTTACATTCAAGGTCAAGTAACTGTC
AGTGTTATTTTAGGTATATTCTTATATATCGGTTATTCAATTATTGACTTACCATATATT
CCTTTATTAGTACTATTTGCTGGTGTCGCAAACTTAATTCCTTTCTTAGGTTCATGGTTA
TCATTTGCACCTGCAGCAATACTCGGTATTATAGATAGTCCTACTACATTTATATGGGTT
TGTATCATTACATTAATTGCACATCAACTTGAAGGTAATATCATTACACCAAATGTAATG
GGTAAATCTTTAAGTATCCATCCTTTAACAATTATCGTTGTTATTTTAGCAGCAGGAGAT
TTAGGTGGCTTTACATTAGTTCTGATTGCAGTGCCATTATATGCTGTACTTAAAACGGTT
GTTAGTAATATTTTCAAATACCGCCAACGCATTATTGATAAAGCAAACAGTAATGTTAAG
GACTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_0913 [new locus tag: SAUSA300_RS04910 ]
- symbol: SAUSA300_0913
- description: hypothetical protein
- length: 361
- theoretical pI: 9.22205
- theoretical MW: 40154.1
- GRAVY: 0.97036
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Sporulation and germination sporulation integral membrane protein YtvI (TIGR02872; HMM-score: 76.9)and 1 moreP-type conjugative transfer protein TrbJ (TIGR02780; HMM-score: 11.1)
- TheSEED :
- UPF0118 membrane protein SAV1012
- PFAM: no clan defined AI-2E_transport; AI-2E family transporter (PF01594; HMM-score: 211.2)and 1 moreECSCR; Endothelial cell-specific chemotaxis regulator (PF15820; HMM-score: 6.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 8
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.019201
- TAT(Tat/SPI): 0.000191
- LIPO(Sec/SPII): 0.012446
- predicted transmembrane helices (TMHMM): 9
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MLNKVWFRTGIALIMLFILIKLFMEVHEVFTPIATIIGSVFLPFLISGFLFYICLPFQNLLEKVGFPRWASITTIMLALFAIIGLIVAFVAPIIISNINNLISQTPALQKEAEQIIKFALAQMDKLPEDVTSRITNMVKSMGDGVTNILSNSLQYITSLISTIFLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLTDLNFTLKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAPAAILGIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLVLIAVPLYAVLKTVVSNIFKYRQRIIDKANSNVKD
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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