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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1020 [new locus tag: SAUSA300_RS05490 ]
  • pan locus tag?: SAUPAN003348000
  • symbol: SAUSA300_1020
  • pan gene symbol?: —
  • synonym:
  • product: glycerophosphoryl diester phosphodiesterase family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1020 [new locus tag: SAUSA300_RS05490 ]
  • symbol: SAUSA300_1020
  • product: glycerophosphoryl diester phosphodiesterase family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1117152..1118078
  • length: 927
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGAAAAAAGTAAACAGAAACATTTTAAATGCGGTACTAGTCGGTGCTGGATTTTTAAGT
    AGTCTATTAATGATCAATAAAAATAAAGTGATTACTAAAAAGCAAACCATCCCTGCTTTT
    TTCAAAGGCAATGCACCATATATATTTGCGCATCGCGGTGGTATGGCTTTAAGACCAGAG
    CAAACGCAACTTGCATTTGACTATGCTAAACAATTAGGCGTTGATGGCTTTGAAACAGAT
    GTGAGACTCACAAAAGATCAACAGCTTATCGTTTTTCATGACGCAACTGTTGATAGAACG
    ACGAACGGCTCTGGAAAAGTTAGTGCCCATACATTAGCAGAATTAAAGAAATTAGACGCA
    GCTTATCACTTCAAAGATATCAATGGACTAACACCATATCGTGGTCATGCACACACAGCT
    ATACTAACCTTCGATGAGTTGCTGAAGCAATATCCTGATATGTATATAAACGTAGACTTA
    AAAGATGCTCCTGAATCCTATGAAGGCTCAATCGCACCACAAATTATGTTTGATACAATT
    GCAGAAAATCAAGCATTTGACCGCGTTCTTGTGACAAGTTTTTATAAAGAACAAATCGTT
    CGTTTTAATAAAATTGCACAAGGATCCGTCGCAATTGGTGCTAGCCAACAGGAAGTTACA
    GAAGCATTTTTAAAATATCATTTATTAGGTGGTAGGTACTACCAACCATTAGCACAAACG
    TTCCAAATGCCTACTCATTTTAAAGGCATTGATTTGACTTCATCTCGTTTTATCAAATGG
    TTAAATGATATGAATATCATTCCAGGCTATTATGGCGTAAATAGTATAAATCTGATGAAT
    GATTTATACCAAAAAGGTGCACACACGATTGTGACAGATCGACCAGATTTAGCACAACAA
    TTCAAACAAACAATCCCGAATAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    927

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1020 [new locus tag: SAUSA300_RS05490 ]
  • symbol: SAUSA300_1020
  • description: glycerophosphoryl diester phosphodiesterase family protein
  • length: 308
  • theoretical pI: 9.52515
  • theoretical MW: 34733.6
  • GRAVY: -0.261039

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)
    Carbohydrates Sugar alcohols Glycerol and Glycerol-3-phosphate Uptake and Utilization  Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)
  • PFAM:
    PLC (CL0384) GDPD; Glycerophosphoryl diester phosphodiesterase family (PF03009; HMM-score: 92.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.67
    • Cytoplasmic Membrane Score: 0.01
    • Cellwall Score: 0.15
    • Extracellular Score: 0.17
    • Internal Helices: 0
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0
    • N-terminally Anchored Score: 7
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.281589
    • TAT(Tat/SPI): 0.011865
    • LIPO(Sec/SPII): 0.095252
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKKVNRNILNAVLVGAGFLSSLLMINKNKVITKKQTIPAFFKGNAPYIFAHRGGMALRPEQTQLAFDYAKQLGVDGFETDVRLTKDQQLIVFHDATVDRTTNGSGKVSAHTLAELKKLDAAYHFKDINGLTPYRGHAHTAILTFDELLKQYPDMYINVDLKDAPESYEGSIAPQIMFDTIAENQAFDRVLVTSFYKEQIVRFNKIAQGSVAIGASQQEVTEAFLKYHLLGGRYYQPLAQTFQMPTHFKGIDLTSSRFIKWLNDMNIIPGYYGVNSINLMNDLYQKGAHTIVTDRPDLAQQFKQTIPNK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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