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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_1272 [new locus tag: SAUSA300_RS06905 ]
- pan locus tag?: SAUPAN003782000
- symbol: SAUSA300_1272
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_1272 [new locus tag: SAUSA300_RS06905 ]
- symbol: SAUSA300_1272
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1401090..1401563
- length: 474
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3915134 NCBI
- RefSeq: YP_493969 NCBI
- BioCyc: see SAUSA300_RS06905
- MicrobesOnline: 1292787 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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421ATGGGATTACTTGATATTGCAAGTATTCGTTCTATAGAAAGAGGCTTTAATTATTATCAA
AGTGAATGCGTCATTAACTTAAAATCATTTTCAGAAACGCAGCATGAGGCTGAAGTAAAG
GGCAGTGGCAACAAAGTATATCGTTGTTATATTGATATGGAACATCCTAGAAAATCCATA
TGTAATTGTCCTCATGCTGATGGAAGACGAGTGATATGTAAACATATGATTGCATTACTC
TTTACAGCTAGTCCAGAAGCAGCAAATAAACATATAATGATGTTAAACGAAGTTGAAGAA
GACTATCAATTACGCAGAAATATGTGGATTGATAGTCTTAAAGAAATGATTAATGATATG
AGTGAAGAAGAACTCCGCGATGCATATTTAAACATGTTAATTGAACATGGAGAAATGGCA
GAATTATTTGGATTAGATGAAGAGGAAGAAATGTTCGAGGACGAATTTTATTAA60
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474
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_1272 [new locus tag: SAUSA300_RS06905 ]
- symbol: SAUSA300_1272
- description: hypothetical protein
- length: 157
- theoretical pI: 4.3956
- theoretical MW: 18458.9
- GRAVY: -0.49172
⊟Function[edit | edit source]
- TIGRFAM: Energy metabolism TCA cycle malate dehydrogenase (acceptor) (TIGR01320; EC 1.1.5.4; HMM-score: 14.3)
- TheSEED :
- FIG01108123: hypothetical protein
- PFAM: no clan defined SWIM; SWIM zinc finger (PF04434; HMM-score: 21.9)and 1 moreFerritin (CL0044) Coat_F; Coat F domain (PF07875; HMM-score: 16.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.028409
- TAT(Tat/SPI): 0.00212
- LIPO(Sec/SPII): 0.003575
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MGLLDIASIRSIERGFNYYQSECVINLKSFSETQHEAEVKGSGNKVYRCYIDMEHPRKSICNCPHADGRRVICKHMIALLFTASPEAANKHIMMLNEVEEDYQLRRNMWIDSLKEMINDMSEEELRDAYLNMLIEHGEMAELFGLDEEEEMFEDEFY
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.