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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_2368 [new locus tag: SAUSA300_RS13085 ]
- pan locus tag?: SAUPAN005962000
- symbol: SAUSA300_2368
- pan gene symbol?: bioX
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_2368 [new locus tag: SAUSA300_RS13085 ]
- symbol: SAUSA300_2368
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2545601..2546068
- length: 468
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3914978 NCBI
- RefSeq: YP_495003 NCBI
- BioCyc: see SAUSA300_RS13085
- MicrobesOnline: 1293883 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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421ATGACATCAAAAGATATTACTCAAATTAGTGTCATTGCTGCGATTTTAACCATTTTGGCA
GTTTTGAAAATACCGTCCATTATACCAGGATTAGATTTTCAATTATCTGCACCGGCAGCA
TTATTGATATTAGCTTTCTTTGGAATTAAAAAGTACTTTTTAGGTGGATTATTATCTAGC
CTATTATTACTAGTATTTGGCGTATTTAATCCAATTAATGTGATTATCTCTATTATATTT
AGAGTTATAGCTATTGCAGTTGTTTATTTATTGAAAATAAATGTACTATCATTAGTTTTA
GCAAGTGTATTAGGCAGTTTGGTATCTAGGCTACTATTATCTATTATTTTAAATTTACCT
GTGTGGGTAGTGTTGTTAAACGCGATTCCAGGCGTAATATTCACTTTAATTGTAGCTATT
CCTTTATATCTCACATTGAGAAAAAGAATGGCAGTATTACTAAGATAA60
120
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240
300
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468
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_2368 [new locus tag: SAUSA300_RS13085 ]
- symbol: SAUSA300_2368
- description: hypothetical protein
- length: 155
- theoretical pI: 11.3944
- theoretical MW: 16754.8
- GRAVY: 1.65742
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008662
- TAT(Tat/SPI): 0.000651
- LIPO(Sec/SPII): 0.035306
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTSKDITQISVIAAILTILAVLKIPSIIPGLDFQLSAPAALLILAFFGIKKYFLGGLLSSLLLLVFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLVLASVLGSLVSRLLLSIILNLPVWVVLLNAIPGVIFTLIVAIPLYLTLRKRMAVLLR
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SAUSA300_2368 < SAUSA300_2369 < SAUSA300_2370 < bioB < bioA < bioD
⊟Regulation[edit | edit source]
- regulator: BirA (repression) regulon
BirA (TF) important in Biotin biosynthesis; RegPrecise transcription unit transferred from N315 data RegPrecise
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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