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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_2441 [new locus tag: SAUSA300_RS13530 ]
  • pan locus tag?: SAUPAN006098000
  • symbol: fnbA
  • pan gene symbol?: fnbA
  • synonym:
  • product: fibronectin binding protein A

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_2441 [new locus tag: SAUSA300_RS13530 ]
  • symbol: fnbA
  • product: fibronectin binding protein A
  • replicon: chromosome
  • strand: -
  • coordinates: 2632745..2635801
  • length: 3057
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    GTGAAAAACAATCTTAGGTACGGCATTAGAAAACATAAATTGGGAGCAGCATCAGTATTC
    TTAGGAACAATGATCGTTGTTGGGATGGGACAAGACAAAGAAGCTGCAGCATCAGAACAA
    AAGACAACTACAGTAGAAGAAAATGGGAATTCAGCTACTGATAATAAAACAAGTGAAACA
    CAAACAACTGCAACTAACGTTAATCATATAGAAGAAACTCAATCATATAACGCAACAGTA
    ACAGAACAACCGTCAAACGCAACACAAGTAACAACTGAAGAAGCACCAAAAGCAGTACAA
    GCACCACAAACTGCACAACCAGCAAATATAGAAACAGTTAAAGAAGAGGTAGTTAAGGAA
    GAAGCGAAACCTCAAGTTAAGGAAACAACACAATCTCAAGACAATAGCGGAGATCAAAGA
    CAAGTAGATTTAACACCTAAAAAGGCTACACAAAATCAAGTCGCAGAAACACAAGTTGAA
    GTGGCACAGCCAAGAACGGCATCAGAAAGTAAGCCACGTGTGACAAGATCAGCAGATGTA
    GCGGAAGCTAAGGAAGCTAGTAACGCGAAAGTGGAAACGGGTACAGATGTAACAAGTAAA
    GTTACAGTAGAAATTGGTTCTATTGAGGGGCATAACAATACAAATAAAGTAGAACCTCAT
    GCAGGACAACGAGCGGTACTAAAATATAAGTTGAAATTTGAGAATGGTTTACATCAAGGT
    GACTACTTTGACTTTACTTTATCAAATAATGTAAATACGCATGGCGTATCAACTGCTAGA
    AAAGTACCAGAAATTAAAAATGGTTCAGTCGTAATGGCGACAGGTGAAGTTTTAGAAGGT
    GGAAAGATTAGATATACATTTACAAATGATATTGAAGATAAGGTTGATGTAACGGCTGAA
    CTAGAAATTAATTTATTTATTGATCCTAAAACTGTACAAACTAATGGAAATCAAACTATA
    ACTTCAACACTAAATGAAGAACAAACTTCAAAGGAATTAGATGTTAAATATAAAGATGGT
    ATTGGGAATTATTATGCCAATTTAAATGGATCGATTGAGACATTTAATAAAGCGAATAAT
    AGATTTTCGCATGTTGCATTTATTAAACCTAATAATGGTAAAACGACAAGTGTGACTGTT
    ACTGGAACTTTAATGAAAGGTAGTAATCAGAATGGAAATCAACCAAAAGTTAGGATATTT
    GAATACTTGGGTAATAATGAAGACATAGCGAAGAGTGTATATGCAAATACGACAGATACT
    TCTAAATTTAAAGAAGTCACAAGTAATATGAGTGGGAATTTGAATTTACAAAATAATGGA
    AGCTATTCATTGAATATAGAAAATCTAGATAAAACTTATGTTGTTCACTATGATGGAGAG
    TATTTAAATGGTACTGATGAAGTTGATTTTAGAACACAAATGGTAGGACATCCAGAGCAA
    CTTTATAAGTATTATTATGATAGAGGATATACCTTAACTTGGGATAATGGTTTAGTTTTA
    TACAGTAATAAAGCGAACGGAAATGGGAAAAATGGTCCGATTATTCAAAATAATAAATTT
    GAATATAAAGAAGATACAATTAAAGAAACTCTTACAGGTCAATATGATAAGAATTTAGTA
    ACTACTGTTGAAGAGGAATATGATTCATCAACTCTTGACATTGATTACCACACAGCTATA
    GATGGTGGAGGTGGATATGTTGATGGATACATTGAAACAATAGAAGAAACGGATTCATCA
    GCTATTGATATCGATTACCATACTGCTGTGGATAGCGAAGCAGGTCACGTTGGAGGATAC
    ACTGAGTCCTCTGAGGAATCAAATCCAATTGACTTTGAAGAATCTACACATGAAAATTCA
    AAACATCACGCTGATGTTGTTGAATATGAAGAAGATACAAACCCAGGTGGTGGTCAGGTT
    ACTACTGAGTCTAACTTAGTTGAATTTGACGAAGAGTCTACAAAAGGTATTGTAACTGGC
    GCAGTGAGCGATCATACAACAGTTGAAGATACGAAAGAATATACAACTGAAAGTAATCTG
    ATTGAATTAGTGGATGAATTACCTGAAGAGCATGGTCAAGCACAAGGACCAGTCGAGGAA
    ATTACTGAAAACAATCATCATATTTCTCATTCTGGTTTAGGAACTGAAAATGGTCACGGG
    AATTATGACGTGATTGAAGAAATCGAAGAAAATAGCCACGTTGATATTAAGAGTGAATTA
    GGTTATGAAGGTGGCCAAAATAGCGGTAACCAGTCATTCGAGGAAGACACAGAAGAAGAC
    AAACCTAAATATGAACAAGGTGGCAATATCGTAGATATCGATTTTGATAGTGTACCTCAA
    ATTCATGGTCAAAATAAAGGTAATCAGTCATTCGAGGAAGATACAGAAAAAGACAAACCT
    AAGTATGAACATGGCGGTAACATCATTGATATCGACTTCGACAGTGTGCCACATATTCAC
    GGATTCAATAAGCACACTGAAATTATTGAAGAAGATACAAATAAAGATAAACCAAGTTAT
    CAATTCGGTGGACACAATAGTGTTGACTTTGAAGAAGATACACTTCCAAAAGTAAGCGGC
    CAAAATGAAGGTCAACAAACGATTGAAGAAGATACAACACCTCCAATCGTGCCACCAACG
    CCACCGACACCAGAAGTACCAAGTGAGCCGGAAACACCAACGCCACCAACACCAGAAGTA
    CCAAGTGAGCCGGAAACACCAACACCACCGACACCAGAAGTGCCGAGTGAGCCAGAAACT
    CCAACACCGCCAACACCAGAGGTACCAGCTGAACCTGGTAAACCAGTACCACCTGCCAAA
    GAAGAACCTAAAAAGCCTTCTAAACCAGTGGAACAAGGTAAAGTAGTAACACCTGTTATT
    GAAATCAATGAAAAGGTTAAAGCAGTGGCACCAACTAAAAAACCACAATCTAAGAAATCT
    GAACTACCTGAAACAGGTGGAGAAGAATCAACAAACAAAGGTATGTTGTTCGGCGGATTA
    TTCAGCATTCTAGGTTTAGCATTATTACGCAGAAATAAAAAGAATCACAAAGCATAA
    60
    120
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    420
    480
    540
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    720
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    840
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    1080
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    1260
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    2160
    2220
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    2400
    2460
    2520
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    2700
    2760
    2820
    2880
    2940
    3000
    3057

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_2441 [new locus tag: SAUSA300_RS13530 ]
  • symbol: FnbA
  • description: fibronectin binding protein A
  • length: 1018
  • theoretical pI: 4.34254
  • theoretical MW: 111708
  • GRAVY: -0.922495

⊟Function[edit | edit source]

  • TIGRFAM:
    Cell structure Cell envelope Other LPXTG cell wall anchor domain (TIGR01167; HMM-score: 25.1)
    gram-positive signal peptide, YSIRK family (TIGR01168; HMM-score: 22)
  • TheSEED  :
    • Fibronectin binding protein FnbA
    Virulence, Disease and Defense Adhesion Adhesins in Staphylococcus  Fibronectin binding protein FnbA
  • PFAM:
    Adhesin (CL0204) SdrG_C_C; C-terminus of bacterial fibrinogen-binding adhesin (PF10425; HMM-score: 130.8)
    no clan defined Fn_bind; Fibronectin binding repeat (PF02986; HMM-score: 104.9)
    and 2 more
    Gram_pos_anchor; LPXTG cell wall anchor motif (PF00746; HMM-score: 34.9)
    YSIRK_signal; YSIRK type signal peptide (PF04650; HMM-score: 32.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cellwall
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 10
    • Extracellular Score: 0
    • Internal Helices: 0
  • LocateP: LPxTG Cell-wall anchored
    • Prediction by SwissProt Classification: Cell Wall
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 1
    • N-terminally Anchored Score: -2
    • Predicted Cleavage Site: found LPxTG motif :LPETG
  • SignalP: Signal peptide SP(Sec/SPI) length 37 aa
    • SP(Sec/SPI): 0.882163
    • TAT(Tat/SPI): 0.008947
    • LIPO(Sec/SPII): 0.090988
    • Cleavage Site: CS pos: 37-38. AAA-SE. Pr: 0.7401
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKNNLRYGIRKHKLGAASVFLGTMIVVGMGQDKEAAASEQKTTTVEENGNSATDNKTSETQTTATNVNHIEETQSYNATVTEQPSNATQVTTEEAPKAVQAPQTAQPANIETVKEEVVKEEAKPQVKETTQSQDNSGDQRQVDLTPKKATQNQVAETQVEVAQPRTASESKPRVTRSADVAEAKEASNAKVETGTDVTSKVTVEIGSIEGHNNTNKVEPHAGQRAVLKYKLKFENGLHQGDYFDFTLSNNVNTHGVSTARKVPEIKNGSVVMATGEVLEGGKIRYTFTNDIEDKVDVTAELEINLFIDPKTVQTNGNQTITSTLNEEQTSKELDVKYKDGIGNYYANLNGSIETFNKANNRFSHVAFIKPNNGKTTSVTVTGTLMKGSNQNGNQPKVRIFEYLGNNEDIAKSVYANTTDTSKFKEVTSNMSGNLNLQNNGSYSLNIENLDKTYVVHYDGEYLNGTDEVDFRTQMVGHPEQLYKYYYDRGYTLTWDNGLVLYSNKANGNGKNGPIIQNNKFEYKEDTIKETLTGQYDKNLVTTVEEEYDSSTLDIDYHTAIDGGGGYVDGYIETIEETDSSAIDIDYHTAVDSEAGHVGGYTESSEESNPIDFEESTHENSKHHADVVEYEEDTNPGGGQVTTESNLVEFDEESTKGIVTGAVSDHTTVEDTKEYTTESNLIELVDELPEEHGQAQGPVEEITENNHHISHSGLGTENGHGNYDVIEEIEENSHVDIKSELGYEGGQNSGNQSFEEDTEEDKPKYEQGGNIVDIDFDSVPQIHGQNKGNQSFEEDTEKDKPKYEHGGNIIDIDFDSVPHIHGFNKHTEIIEEDTNKDKPSYQFGGHNSVDFEEDTLPKVSGQNEGQQTIEEDTTPPIVPPTPPTPEVPSEPETPTPPTPEVPSEPETPTPPTPEVPSEPETPTPPTPEVPAEPGKPVPPAKEEPKKPSKPVEQGKVVTPVIEINEKVKAVAPTKKPQSKKSELPETGGEESTNKGMLFGGLFSILGLALLRRNKKNHKA

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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