From AureoWiki
Jump to navigation Jump to search

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_2460 [new locus tag: SAUSA300_RS13645 ]
  • pan locus tag?: SAUPAN006165000
  • symbol: SAUSA300_2460
  • pan gene symbol?: —
  • synonym:
  • product: acetyltransferase family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_2460 [new locus tag: SAUSA300_RS13645 ]
  • symbol: SAUSA300_2460
  • product: acetyltransferase family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2657098..2657382
  • length: 285
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGAGTAACCTTGAAATCAAACAAGGCGAGAACAAATTCTATATTGGTGATGATGAAAAT
    AATGCTTTAGCTGAAATCACATACCGTTTTGTGGATAATAATGAAATTAACATTGATCAT
    ACAGGCGTATCTGATGAACTTGGTGGTCAAGGTGTTGGCAAAAAACTACTTAAAGCAGTT
    GTTGAACACGCTCGAGAAAATAATTTGAAAATTATTGCCTCATGTTCATTTGCCAAACAT
    ATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAA
    60
    120
    180
    240
    285

⊟Protein[edit | edit source]

Protein Data Bank: 2H5M

⊟General[edit | edit source]

  • locus tag: SAUSA300_2460 [new locus tag: SAUSA300_RS13645 ]
  • symbol: SAUSA300_2460
  • description: acetyltransferase family protein
  • length: 94
  • theoretical pI: 4.54531
  • theoretical MW: 10547.7
  • GRAVY: -0.558511

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal-protein-alanine acetyltransferase (TIGR01575; EC 2.3.1.128; HMM-score: 23.1)
    and 1 more
    methanogenesis imperfect marker protein 11 (TIGR03280; HMM-score: 12.3)
  • TheSEED  :
    • Acetyltransferase (GNAT) family protein
  • PFAM:
    Acetyltrans (CL0257) Acetyltransf_CG; GCN5-related N-acetyl-transferase (PF14542; HMM-score: 89.1)
    and 5 more
    Acetyltransf_1; Acetyltransferase (GNAT) family (PF00583; HMM-score: 28.5)
    Acetyltransf_10; Acetyltransferase (GNAT) domain (PF13673; HMM-score: 27.8)
    Acetyltransf_7; Acetyltransferase (GNAT) domain (PF13508; HMM-score: 17.3)
    NTP_transf (CL0260) Pox_polyA_pol; Poxvirus poly(A) polymerase nucleotidyltransferase domain (PF03296; HMM-score: 13.1)
    no clan defined DUF2312; Uncharacterized protein conserved in bacteria (DUF2312) (PF10073; HMM-score: 12.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004095
    • TAT(Tat/SPI): 0.000184
    • LIPO(Sec/SPII): 0.000375
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSNLEIKQGENKFYIGDDENNALAEITYRFVDNNEINIDHTGVSDELGGQGVGKKLLKAVVEHARENNLKIIASCSFAKHMLEKEDSYQDVYLG

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SAUSA300_2460&oldid=101933"