PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus USA300_FPR3757
• locus tag: SAUSA300_RS00290 [old locus tag: SAUSA300_0056 ]
• pan locus tag^?: SAUPAN000131000
• symbol: SAUSA300_RS00290
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Additional information (user-provided)

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SAUSA300_RS00290 [old locus tag: SAUSA300_0056 ]
• symbol: SAUSA300_RS00290
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 65715..66218
• length: 504
• essential: unknown

⊟Accession numbers

• Location: NC_007793 (65715..66218) NCBI
• BioCyc: SAUSA300_RS00290 BioCyc
• MicrobesOnline: see SAUSA300_0056

⊟Phenotype

⊟Additional information (user-provided)

⊟DNA sequence

• 1
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  ATGAATACAATCAAAAGTACGATACACACAGAAGCGATATTTAGCGATGATGAACAACAT
  CGCTACTTACTCAAAAAGATATGGGATGACAAGAAACCGGCTTGTACTGTGATAACGATG
  TATCTTCATTTAGATGGTGTATTATCACTCGATCTTACTACGGTTCTCATCCTCAATCAA
  TTAGCTAATTCTGAGCAATATGGCGCTGTTTATCTCGTTAATCTTTTCTCTAATATTAAA
  ACACCAGAGAACCTTAAACATATCAAAGAGCCTTATGATGAGCACACAGATATACACTTA
  ATGAAAGCAATTAGTGAAAGTGACACAGTCATTCTTGCTTATGGTGCCTATGCGAAGCGA
  CCAGTTGTTATCGACCGTGTCGAACAAGTGATGGAAATGTTAAAACCTCATAAAAAGAAA
  GTAAAAAAGCTCATAAATCCAGTAACGAACGAAGTTATGCATCCACTCAACCCTAAAGCA
  CGTCAAAAATGGACACTAAAGTAA
  60
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  504
  

⊟Protein

⊟General

• locus tag: SAUSA300_RS00290 [old locus tag: SAUSA300_0056 ]
• symbol: SAUSA300_RS00290
• description: hypothetical protein
• length: 167
• theoretical pI: 9.23841
• theoretical MW: 19304.4
• GRAVY: -0.326946

⊟Function

• TIGRFAM:
  Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA(Ile)-lysidine synthetase, C-terminal domain (TIGR02433; EC 6.-.-.-; HMM-score: 9.2)
• TheSEED: see SAUSA300_0056
• PFAM:
  no clan defined DUF1643; Protein of unknown function (DUF1643) (PF07799; HMM-score: 96.4)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.9701
  • Cytoplasmic Membrane Score: 0.0144
  • Cell wall & surface Score: 0.0018
  • Extracellular Score: 0.0136
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.003743
  • TAT(Tat/SPI): 0.000139
  • LIPO(Sec/SPII): 0.000363
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 447014931 NCBI
• RefSeq: WP_001092187 NCBI
• UniProt: see SAUSA300_0056

⊟Additional information (user-provided)

⊟Protein sequence

• MNTIKSTIHTEAIFSDDEQHRYLLKKIWDDKKPACTVITMYLHLDGVLSLDLTTVLILNQLANSEQYGAVYLVNLFSNIKTPENLKHIKEPYDEHTDIHLMKAISESDTVILAYGAYAKRPVVIDRVEQVMEMLKPHKKKVKKLINPVTNEVMHPLNPKARQKWTLK

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Additional information (user-provided)

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Additional information (user-provided)

⊟Other information (user-provided)

You can add further information about the gene and protein here. [edit]

⊟Literature

⊟References

⊟Relevant publications