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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS00290 [old locus tag: SAUSA300_0056 ]
- pan locus tag?: SAUPAN000131000
- symbol: SAUSA300_RS00290
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS00290 [old locus tag: SAUSA300_0056 ]
- symbol: SAUSA300_RS00290
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 65715..66218
- length: 504
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (65715..66218) NCBI
- BioCyc: SAUSA300_RS00290 BioCyc
- MicrobesOnline: see SAUSA300_0056
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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481ATGAATACAATCAAAAGTACGATACACACAGAAGCGATATTTAGCGATGATGAACAACAT
CGCTACTTACTCAAAAAGATATGGGATGACAAGAAACCGGCTTGTACTGTGATAACGATG
TATCTTCATTTAGATGGTGTATTATCACTCGATCTTACTACGGTTCTCATCCTCAATCAA
TTAGCTAATTCTGAGCAATATGGCGCTGTTTATCTCGTTAATCTTTTCTCTAATATTAAA
ACACCAGAGAACCTTAAACATATCAAAGAGCCTTATGATGAGCACACAGATATACACTTA
ATGAAAGCAATTAGTGAAAGTGACACAGTCATTCTTGCTTATGGTGCCTATGCGAAGCGA
CCAGTTGTTATCGACCGTGTCGAACAAGTGATGGAAATGTTAAAACCTCATAAAAAGAAA
GTAAAAAAGCTCATAAATCCAGTAACGAACGAAGTTATGCATCCACTCAACCCTAAAGCA
CGTCAAAAATGGACACTAAAGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS00290 [old locus tag: SAUSA300_0056 ]
- symbol: SAUSA300_RS00290
- description: hypothetical protein
- length: 167
- theoretical pI: 9.23841
- theoretical MW: 19304.4
- GRAVY: -0.326946
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis tRNA and rRNA base modification tRNA(Ile)-lysidine synthetase, C-terminal domain (TIGR02433; EC 6.-.-.-; HMM-score: 9.2)
- TheSEED: see SAUSA300_0056
- PFAM: no clan defined DUF1643; Protein of unknown function (DUF1643) (PF07799; HMM-score: 76.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003743
- TAT(Tat/SPI): 0.000139
- LIPO(Sec/SPII): 0.000363
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI: 447014931 NCBI
- RefSeq: WP_001092187 NCBI
- UniProt: see SAUSA300_0056
⊟Protein sequence[edit | edit source]
- MNTIKSTIHTEAIFSDDEQHRYLLKKIWDDKKPACTVITMYLHLDGVLSLDLTTVLILNQLANSEQYGAVYLVNLFSNIKTPENLKHIKEPYDEHTDIHLMKAISESDTVILAYGAYAKRPVVIDRVEQVMEMLKPHKKKVKKLINPVTNEVMHPLNPKARQKWTLK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.