From AureoWiki
Jump to navigation Jump to search
Pangenome04-0298108BA0217611819-97685071193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS00315 [old locus tag: SAUSA300_0062 ]
  • pan locus tag?: SAUPAN000811000
  • symbol: SAUSA300_RS00315
  • pan gene symbol?: arcB
  • synonym:
  • product: ornithine carbamoyltransferase 1, catabolic

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS00315 [old locus tag: SAUSA300_0062 ]
  • symbol: SAUSA300_RS00315
  • product: ornithine carbamoyltransferase 1, catabolic
  • replicon: chromosome
  • strand: -
  • coordinates: 69839..70837
  • length: 999
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_007793 (69839..70837) NCBI
  • BioCyc:
  • MicrobesOnline:

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGAAAAATTTAAGAAATAGAAACTTTTTAACTTTGTTAGACTTCACACAAAAAGAAATG
    GAATTTTTACTTAATTTATCTGAAGATCTTAAACGCGCAAAATATGCAGGAATAGAACAA
    CAAAAAATGAAAGGTAAAAATATCGCTCTACTTTTTGAAAAAGATTCAACACGCACTCGA
    TGTGCATTTGAAACAGCGGCTTATGATCAAGGTGCACATGTAACATACCTTGGGCCAACA
    GGTTCTCAAATGGGTAAAAAAGAGTCTACCAAAGATACTGCTCGTGTTTTAGGTGGAATG
    TATGATGGCATAGAATATCGTGGATTCTCACAAAGAGTAGTTGAGGATTTGGCAAAATAT
    TCTGGCGTTCCCGTATGGAATGGTTTAACAGATGAAGATCATCCTACACAAGTACTTGCT
    GATTTTTTAACAGCTAAAGAAGTATTGAAAAAACCATATAATGAAATTAACTTCACATAT
    GTTGGAGATGGACGTAATAACGTTGCAAATGCCTTAATGCAAGGAGCAGCAATCATGGGC
    ATGACTTTCCATCTTGTATGTCCTAAAGAACTAAATCCAACTGATGAATTATTAAATCGG
    TGTAATGATATAGCTGACAAAAACGGTGGTGAAATCCTTATAACTGATGATATTGATGAA
    GGTGTCAAAGGATCTGATGTAATTTACACAGATGTTTGGGTATCTATGGGTGAACCTGAT
    GAAGTTTGGGAAAAACGTATCAAATTATTAGAACCATACCGTGTAACTAAAGAATTAATG
    AAAAAAACAGGTAATCCACATACAATTTTTGAACATTGCTTACCATCATTCCATGATACT
    GAAACAATAATCGGTAAACAAATTCAAGAAAAATATGGTCTAACTGAAATGGAAGTAACA
    AATGAAGTATTTGAAAGTGAACAATCAGTTGTTTTCCAAGAAGCAGAAAATAGAGCACAT
    ACAATAAAAGCAGTCATGGTAGCAACATTAGGAGAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    999

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SAUSA300_RS00315 [old locus tag: SAUSA300_0062 ]
  • symbol: SAUSA300_RS00315
  • description: ornithine carbamoyltransferase 1, catabolic
  • length: 332
  • theoretical pI: 4.83949
  • theoretical MW: 37512.3
  • GRAVY: -0.478313

Function[edit | edit source]

  • reaction:
    EC 2.1.3.3?  ExPASy
    Ornithine carbamoyltransferase Carbamoyl phosphate + L-ornithine = phosphate + L-citrulline
  • TIGRFAM:
    Metabolism Amino acid biosynthesis Glutamate family ornithine carbamoyltransferase (TIGR00658; EC 2.1.3.3; HMM-score: 405.7)
    and 3 more
    Metabolism Energy metabolism Amino acids and amines putrescine carbamoyltransferase (TIGR04384; EC 2.1.3.6; HMM-score: 264.9)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Pyrimidine ribonucleotide biosynthesis aspartate carbamoyltransferase (TIGR00670; EC 2.1.3.2; HMM-score: 118.1)
    knotted carbamoyltransferase YgeW (TIGR03316; EC 2.1.3.-; HMM-score: 68.1)
  • TheSEED:
  • PFAM:
    Asp-glut_race (CL0399) OTCace; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain (PF00185; HMM-score: 186)
    no clan defined OTCace_N; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain (PF02729; HMM-score: 154)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005128
    • TAT(Tat/SPI): 0.001242
    • LIPO(Sec/SPII): 0.000644
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

  • GI: 446716276 NCBI
  • RefSeq: WP_000793596 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MKNLRNRNFLTLLDFTQKEMEFLLNLSEDLKRAKYAGIEQQKMKGKNIALLFEKDSTRTRCAFETAAYDQGAHVTYLGPTGSQMGKKESTKDTARVLGGMYDGIEYRGFSQRVVEDLAKYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKPYNEINFTYVGDGRNNVANALMQGAAIMGMTFHLVCPKELNPTDELLNRCNDIADKNGGEILITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEKRIKLLEPYRVTKELMKKTGNPHTIFEHCLPSFHDTETIIGKQIQEKYGLTEMEVTNEVFESEQSVVFQEAENRAHTIKAVMVATLGE

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]