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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS00490 [old locus tag: SAUSA300_0094 ]
- pan locus tag?: SAUPAN000846000
- symbol: SAUSA300_RS00490
- pan gene symbol?: —
- synonym:
- product: DUF4865 domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS00490 [old locus tag: SAUSA300_0094 ]
- symbol: SAUSA300_RS00490
- product: DUF4865 domain-containing protein
- replicon: chromosome
- strand: -
- coordinates: 102427..102960
- length: 534
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (102427..102960) NCBI
- BioCyc: SAUSA300_RS00490 BioCyc
- MicrobesOnline: see SAUSA300_0094
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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481ATGCATGCAATGCAATATCATGTTAAGTTGCCTAGTGATTACAATATGGAAATAATTAGA
GATAGAGTTCGATTAAATGGTTATAAGACTGATGGATTTAAAAATTTAATTATAAAAGCT
TATTTAATAAGTCAAACAACTACTAATTGCATTACAAATACTTATTCACCATTATATTTA
TGGAGAAGTTCAGAGGGGATGACTGAATTTATATTCAATGGATTTTATGATAATGTTATT
TCTTCTTTTGGATGGCAAAATATAAATATTGGTGTGATATATTCAATGAACATAACCGAT
TCTGTTAAACATAGTCTTTATGCGCTTGAAGAATATATCGACATTTTCCCTACTTTATCT
CTAAAAGAAATAGAAATCAAAAAATTGTTTAGAATCTTCGATAATGCAGTTGCAGAAATT
ATAATTTATAATCCTGATAAGTGGAAGTTTGTGAAATATTCATTTATTGAAAATCTTCCA
AAGAGTCTCAATCCAAATATAAAAATTTATGATGTACTATATATCTCACAATGA60
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534
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS00490 [old locus tag: SAUSA300_0094 ]
- symbol: SAUSA300_RS00490
- description: DUF4865 domain-containing protein
- length: 177
- theoretical pI: 7.57096
- theoretical MW: 20874.9
- GRAVY: -0.10678
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SAUSA300_0094
- PFAM: no clan defined DUF4865; Domain of unknown function (DUF4865) (PF16157; HMM-score: 203.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.113688
- TAT(Tat/SPI): 0.000624
- LIPO(Sec/SPII): 0.003671
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI: 446465309 NCBI
- RefSeq: WP_000543163 NCBI
- UniProt: see SAUSA300_0094
⊟Protein sequence[edit | edit source]
- MHAMQYHVKLPSDYNMEIIRDRVRLNGYKTDGFKNLIIKAYLISQTTTNCITNTYSPLYLWRSSEGMTEFIFNGFYDNVISSFGWQNINIGVIYSMNITDSVKHSLYALEEYIDIFPTLSLKEIEIKKLFRIFDNAVAEIIIYNPDKWKFVKYSFIENLPKSLNPNIKIYDVLYISQ
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.