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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS04375 [old locus tag: SAUSA300_0811 ]
- pan locus tag?: SAUPAN002867000
- symbol: SAUSA300_RS04375
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS04375 [old locus tag: SAUSA300_0811 ]
- symbol: SAUSA300_RS04375
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 891017..891223
- length: 207
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (891017..891223) NCBI
- BioCyc: SAUSA300_RS04375 BioCyc
- MicrobesOnline: see SAUSA300_0811
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181GTGCTAGATCATACAAATGAATCTGTAAAACGTGTGTTTAAGTATAGAGATAAGCAAGAA
CTATTAAATAAGTATCACGAATTATTAGACAAATACTTTCTTCATAACATTTCGTTCTAT
GAAGAAGATAAAAACAACGAACGTATATATGGTTTAGTTGTTCATACTAAAAACAAATTA
GGAGATGAAGATTATGAAAGAGTTTAA60
120
180
207
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS04375 [old locus tag: SAUSA300_0811 ]
- symbol: SAUSA300_RS04375
- description: hypothetical protein
- length: 68
- theoretical pI: 6.51567
- theoretical MW: 8422.37
- GRAVY: -1.12353
⊟Function[edit | edit source]
- TIGRFAM: Hypothetical proteins Conserved TIGR02652 family protein (TIGR02652; HMM-score: 13)
- TheSEED: see SAUSA300_0811
- PFAM: no clan defined DUF2396; Protein of unknown function (DUF2396) (PF09654; HMM-score: 12.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001149
- TAT(Tat/SPI): 0.000116
- LIPO(Sec/SPII): 0.000398
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI: 446806799 NCBI
- RefSeq: WP_000884055 NCBI
- UniProt: see SAUSA300_0811
⊟Protein sequence[edit | edit source]
- MLDHTNESVKRVFKYRDKQELLNKYHELLDKYFLHNISFYEEDKNNERIYGLVVHTKNKLGDEDYERV
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.