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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS04655 [old locus tag: SAUSA300_0862 ]
- pan locus tag?: SAUPAN003065000
- symbol: SAUSA300_RS04655
- pan gene symbol?: glpQ
- synonym:
- product: glycerophosphodiester phosphodiesterase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS04655 [old locus tag: SAUSA300_0862 ]
- symbol: SAUSA300_RS04655
- product: glycerophosphodiester phosphodiesterase
- replicon: chromosome
- strand: -
- coordinates: 940901..941830
- length: 930
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (940901..941830) NCBI
- BioCyc: SAUSA300_RS04655 BioCyc
- MicrobesOnline: see SAUSA300_0862
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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901ATGACTAACTCTTCGAAAAGCTTCACTAAATTTATGGCTGCTTCTGCTGTTTTTACTATG
GGATTTTTATCAGTACCTACTGCTGGCGCTGAACAAACAAATCAAATTGCAAATAAACCT
CAGGCTATTCAATGGCATACAAATTTAACGAATGAGCGATTCACTACTATCGCACATCGT
GGCGCAAGTGGCTATGCACCCGAGCATACGTTTCAAGCATATGATAAGAGTCATAATGAG
TTAAAAGCATCTTATATCGAAATTGATTTACAACGTACCAAAGATGGCCATTTAGTTGCT
ATGCATGATGAAACTGTTAACCGTACAACAAATGGACACGGTAAAGTTGAGGATTATACC
CTTGATGAATTAAAACAGTTAGATGCAGGAAGTTGGTTTAATAAAAAATATCCAAAATAC
GCAAGAGCAAGTTATAAAAATGCTAAAGTACCCACTTTAGATGAAATTTTAGAACGTTAT
GGCCCGAATGCAAACTATTATATTGAAACAAAGTCACCTGATGTATACCCAGGAATGGAA
GAACAATTATTAGCTTCATTGAAAAAGCATCACCTTTTAAATAACAATAAATTAAAAAAT
GGACATGTAATGATTCAATCATTTTCTGACGAAAGTTTAAAGAAAATTCATCGTCAAAAT
AAGCATGTGCCATTAGTAAAATTAGTTGATAAAGGTGAACTACAACAATTTAACGACCAA
CGCTTAAAAGAGATACGCTCTTATGCGATTGGATTAGGTCCTGATTATACAGATTTAACT
GAACAAAATACCCATCATTTAAAAGACTTAGGATTTATAGTACATCCTTATACAGTGAAT
GAAAAAGCTGATATGTTACGATTAAATAAATATGGCGTTGATGGTGTCTTTACAAATTTC
GCTGATAAATATAAAGAAGTCATTAAGTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS04655 [old locus tag: SAUSA300_0862 ]
- symbol: SAUSA300_RS04655
- description: glycerophosphodiester phosphodiesterase
- length: 309
- theoretical pI: 9.14583
- theoretical MW: 35310.5
- GRAVY: -0.731068
⊟Function[edit | edit source]
- reaction: EC 3.1.4.46? ExPASyGlycerophosphodiester phosphodiesterase A glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate
- TIGRFAM:
- TheSEED: see SAUSA300_0862
- PFAM: PLC (CL0384) GDPD; Glycerophosphoryl diester phosphodiesterase family (PF03009; HMM-score: 162.5)and 1 moreGDPD_2; Glycerophosphoryl diester phosphodiesterase family (PF13653; HMM-score: 16.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.3
- Cellwall Score: 4.55
- Extracellular Score: 5.15
- Internal Helices: 0
- LocateP:
- SignalP: Signal peptide SP(Sec/SPI) length 30 aa
- SP(Sec/SPI): 0.828547
- TAT(Tat/SPI): 0.163998
- LIPO(Sec/SPII): 0.002972
- Cleavage Site: CS pos: 30-31. AGA-EQ. Pr: 0.8839
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI: 446107464 NCBI
- RefSeq: WP_000185319 NCBI
- UniProt: see SAUSA300_0862
⊟Protein sequence[edit | edit source]
- MTNSSKSFTKFMAASAVFTMGFLSVPTAGAEQTNQIANKPQAIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEKADMLRLNKYGVDGVFTNFADKYKEVIK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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