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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

organism: Staphylococcus aureus USA300_FPR3757
locus tag: SAUSA300_RS06580 [old locus tag: SAUSA300_1213 ]
pan locus tag^?: SAUPAN003673000
symbol: SAUSA300_RS06580
pan gene symbol^?: —
synonym:
product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SAUSA300_RS06580 [old locus tag: SAUSA300_1213 ]
symbol: SAUSA300_RS06580
product: hypothetical protein
replicon: chromosome
strand: +
coordinates: 1331639..1331830
length: 192
essential: unknown other strains

⊟Accession numbers[edit | edit source]

Location: NC_007793 (1331639..1331830) NCBI
BioCyc: SAUSA300_RS06580 BioCyc
MicrobesOnline: see SAUSA300_1213

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
181
ATGAATTTACAGTCATACATAGGCAAATTAGTCAAATTAACGCTTACTAATAATAAAATA
TTAATTGGAAAAGTGATAGACTTTGATGATAAAGTTGATAATTTTGATGGTTATAATTCG
ATAGAAATTGATACAGGTAGAATTACATATGATATATCAGAAAATAAAATTAAAACTATT
GTTTTACAATAA
60
120
180
192

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SAUSA300_RS06580 [old locus tag: SAUSA300_1213 ]
symbol: SAUSA300_RS06580
description: hypothetical protein
length: 63
theoretical pI: 4.87891
theoretical MW: 7193.22
GRAVY: -0.168254

⊟Function[edit | edit source]

TIGRFAM:
TheSEED: see SAUSA300_1213
PFAM:
Sm-like (CL0527) LSM; LSM domain (PF01423; HMM-score: 17.8)
and 1 more
no clan defined DUF150_C; RimP C-terminal SH3 domain (PF17384; HMM-score: 13.5)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
LocateP:
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.013316
- TAT(Tat/SPI): 0.000286
- LIPO(Sec/SPII): 0.001943
predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

GI: 446976115 NCBI
RefSeq: WP_001053371 NCBI
UniProt: see SAUSA300_1213

⊟Protein sequence[edit | edit source]

MNLQSYIGKLVKLTLTNNKILIGKVIDFDDKVDNFDGYNSIEIDTGRITYDISENKIKTIVLQ

⊟Experimental data[edit | edit source]

experimentally validated: data available for NCTC8325
protein localization:
quantitative data / protein copy number per cell:
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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