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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS08190
- pan locus tag?:
- symbol: SAUSA300_RS08190
- pan gene symbol?: —
- synonym:
- product: competence protein ComGF
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS08190
- symbol: SAUSA300_RS08190
- product: competence protein ComGF
- replicon: chromosome
- strand: -
- coordinates: 1653621..1654118
- length: 498
- essential: unknown
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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481ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATC
AAAAGACATGTATACAGTATTAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCG
ATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACTTAATTAGACTTAGTAAAACT
TTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATT
TTACATAAAGGTGAAGAAATGATCGAATACAAATTAATTAATAATAAAATTATTAAAGTT
GTAAATGACAGAGGAAATATAACAATGATTAATAATGTTACAGCATTTACTGCAAATATC
TACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA60
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498
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS08190
- symbol: SAUSA300_RS08190
- description: competence protein ComGF
- length: 165
- theoretical pI: 10.2218
- theoretical MW: 19164.7
- GRAVY: 0.324848
⊟Function[edit | edit source]
- TIGRFAM: Cell envelope Surface structures prepilin-type N-terminal cleavage/methylation domain (TIGR02532; HMM-score: 22.6)Protein fate Protein and peptide secretion and trafficking prepilin-type N-terminal cleavage/methylation domain (TIGR02532; HMM-score: 22.6)and 3 moreCell envelope Surface structures type IV pilus modification protein PilV (TIGR02523; HMM-score: 16.8)Protein fate Protein modification and repair type IV pilus modification protein PilV (TIGR02523; HMM-score: 16.8)Cell envelope Surface structures Verru_Chthon cassette protein C (TIGR02599; HMM-score: 13.6)
- TheSEED:
- PFAM: no clan defined ComGF; Putative Competence protein ComGF (PF15980; HMM-score: 39.2)and 1 moreN_methyl; Prokaryotic N-terminal methylation motif (PF07963; HMM-score: 26)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helix: 1
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001409
- TAT(Tat/SPI): 0.000095
- LIPO(Sec/SPII): 0.000728
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_001789864 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDILDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQTKTIYV
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.