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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS08250 [old locus tag: SAUSA300_1511 ]
  • pan locus tag?: SAUPAN004132000
  • symbol: SAUSA300_RS08250
  • pan gene symbol?: rpmG
  • synonym:
  • product: 50S ribosomal protein L33

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS08250 [old locus tag: SAUSA300_1511 ]
  • symbol: SAUSA300_RS08250
  • product: 50S ribosomal protein L33
  • replicon: chromosome
  • strand: -
  • coordinates: 1661478..1661627
  • length: 150
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    ATGCGCGTAAACGTAACTTTAGCTTGTACGGAATGTGGTGACAGAAACTACATTACAACT
    AAGAACAAAAGAAATAATCCAGAACGTGTTGAAATGAAGAAATTCTGTTCACGTGAAAAC
    AAACAAACTTTACACCGTGAAACAAAATAA
    60
    120
    150

⊟Protein[edit | edit source]

Protein Data Bank: 5LI0
Protein Data Bank: 5ND8
Protein Data Bank: 5ND9

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS08250 [old locus tag: SAUSA300_1511 ]
  • symbol: SAUSA300_RS08250
  • description: 50S ribosomal protein L33
  • length: 49
  • theoretical pI: 10.2922
  • theoretical MW: 5872.72
  • GRAVY: -1.36327

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein bL33 (TIGR01023; HMM-score: 73.5)
  • TheSEED: see SAUSA300_1511
  • PFAM:
    Zn_Beta_Ribbon (CL0167) Ribosomal_L33; Ribosomal protein L33 (PF00471; HMM-score: 79.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 10
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.093897
    • TAT(Tat/SPI): 0.004774
    • LIPO(Sec/SPII): 0.056419
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRVNVTLACTECGDRNYITTKNKRNNPERVEMKKFCSRENKQTLHRETK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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