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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS09100 [old locus tag: SAUSA300_1667 ]
- pan locus tag?: SAUPAN004375000
- symbol: SAUSA300_RS09100
- pan gene symbol?: —
- synonym:
- product: glycerophosphoryl diester phosphodiesterase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS09100 [old locus tag: SAUSA300_1667 ]
- symbol: SAUSA300_RS09100
- product: glycerophosphoryl diester phosphodiesterase
- replicon: chromosome
- strand: -
- coordinates: 1832192..1832935
- length: 744
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (1832192..1832935) NCBI
- BioCyc: SAUSA300_RS09100 BioCyc
- MicrobesOnline: see SAUSA300_1667
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721ATGACTCTGAATAAACTGAAAGATGAATTACAAATTGTTTCGCACCGTGGATTGCCGAGT
GATTTTCCTGAAAATACAATGGTCGGTTATCGAGAGGTAATGGGGCTCAATGTTGCTATG
TTAGAAATAGATGTTCATTTGACCAAAGACCAACATTTTGTTGTGATACATGATGAAACA
ATTGATAGAACATCGGATGGTAAGGGGCGTATTGCTGATTACACATTATCGCAATTAAAA
TCATTTGATTTTGGTAGTTATAAAGATGTTGCTTTTAAGGGAGAACGAATACCCACGTTA
GATGAAGTACTTTCATTATGCTTAAAGTATGATAAAAAGCTATTGATTGAATTGAAAAGT
CCGAATTTATATCCAGAAATAGAATGTAAATTGCTGGCATTTTTGGAAGAAAAGAAAGTC
GATGCGACACAAGTAGTTATACAATCTTTTGATATCGAATGCATCGAAAAGTTAAACACA
TTGGGCAGTATATATGAATTAGGTGTGCTTTGTAGTAAACGTAATTATTGGTATAAAAAG
CCAAACTTTTCAAGAATTGCTCAAATTGCTAGTTATGTTAATCCTAATTATGCATTAGTG
ACCAGAAAATTTGTTGATAAAGCACATCATCATCAATTACAGGTTATGCCATACACAGTT
AATAAATTGAAAACTGGAGAAAAATTAAGACAAATGGGTGTAGATGGATTAATTACAGAT
AATCCGAAATTATTTATTAAGTGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS09100 [old locus tag: SAUSA300_1667 ]
- symbol: SAUSA300_RS09100
- description: glycerophosphoryl diester phosphodiesterase
- length: 247
- theoretical pI: 7.97488
- theoretical MW: 28404.8
- GRAVY: -0.276923
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SAUSA300_1667
- PFAM: PLC (CL0384) GDPD; Glycerophosphoryl diester phosphodiesterase family (PF03009; HMM-score: 145.5)and 1 moreGDPD_2; Glycerophosphoryl diester phosphodiesterase family (PF13653; HMM-score: 22.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001056
- TAT(Tat/SPI): 0.000151
- LIPO(Sec/SPII): 0.000193
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI: 446096427 NCBI
- RefSeq: WP_000174282 NCBI
- UniProt: see SAUSA300_1667
⊟Protein sequence[edit | edit source]
- MTLNKLKDELQIVSHRGLPSDFPENTMVGYREVMGLNVAMLEIDVHLTKDQHFVVIHDETIDRTSDGKGRIADYTLSQLKSFDFGSYKDVAFKGERIPTLDEVLSLCLKYDKKLLIELKSPNLYPEIECKLLAFLEEKKVDATQVVIQSFDIECIEKLNTLGSIYELGVLCSKRNYWYKKPNFSRIAQIASYVNPNYALVTRKFVDKAHHHQLQVMPYTVNKLKTGEKLRQMGVDGLITDNPKLFIK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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