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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS09150 [old locus tag: SAUSA300_1676 ]
- pan locus tag?: SAUPAN004390000
- symbol: SAUSA300_RS09150
- pan gene symbol?: sgtA
- synonym:
- product: transglycosylase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS09150 [old locus tag: SAUSA300_1676 ]
- symbol: SAUSA300_RS09150
- product: transglycosylase
- replicon: chromosome
- strand: +
- coordinates: 1843108..1844013
- length: 906
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (1843108..1844013) NCBI
- BioCyc: SAUSA300_RS09150 BioCyc
- MicrobesOnline: see SAUSA300_1676
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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901ATGACGAATCAAGACAACAATCATCAATTGAATCATCGTATATATCATTTTGAAAAGATA
TATAAAGCTATCAAACATGTCATTGTTTTTATATTTATGATTTTCATTGCCATCGTTGCT
ATCGCTGTGATTGCGATGTCTTTATATTTTCATCATTTAACTAAAACGTCCGACTCATTA
TCAGATGATGCTTTAATAAAAAAAGTTCGACAAATACCTGGCGATGAATTATTAGATCAT
AATAACAAAAATTTATTATATGAGTATAACCATTCTCAAAACTCACTCATTATAGGCCCT
AAAACATCAAGTCCAAATGTCATTAAAGCATTAACGTCATCTGAAGACACTTTATTTTAT
AAACATGATGGCATCTTACCAAAGGCGATTTTAAGAGCAATGATACAAGATATTTTTAAT
ACTGATCAAAGTTCAGGTGGTAGCACAATTACACAACAACTTGTTAAAAATCAAGTTCTT
ACCAACGAAAAAACATATAGTAGAAAAGCAAATGAACTTCGCCTAGCAATTAGATTAGAA
CACCTACTCTCAAAAGATGAAATTATATATACATATTTAAATATAGTTCCCTTCGGTAGA
GATTATAATGGCGCTAATATTTCCGGAATTGCATCCGCTTCATATAGTCTATTTGGTATT
CCACCAAAAGATTTATCAATTGCACAATCTGCATACCTTATCGGTTTGTTGCAAAGCCCA
TATGGCTATACACCCTACGAAAAAGATGGAACGTTAAAATCGGATAAAGATTTGAAATAT
AGTATTCAAAGACAACATTATGTATTAAAGCGTATGTTAATCGAAGATCAAATCACTGAA
AAAGAATACAACGACGCATTAAAATATGATATTAAATCACATTTGTTAAATCGAAAAAAG
CGTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS09150 [old locus tag: SAUSA300_1676 ]
- symbol: SAUSA300_RS09150
- description: transglycosylase
- length: 301
- theoretical pI: 9.50571
- theoretical MW: 34526.3
- GRAVY: -0.341196
⊟Function[edit | edit source]
- TIGRFAM: Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan penicillin-binding protein, 1A family (TIGR02074; HMM-score: 172.3)and 3 moreCell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan penicillin-binding protein 1C (TIGR02073; HMM-score: 136.6)Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan penicillin-binding protein 1B (TIGR02071; HMM-score: 126.7)Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan monofunctional biosynthetic peptidoglycan transglycosylase (TIGR02070; EC 2.4.2.-; HMM-score: 96)
- TheSEED: see SAUSA300_1676
- PFAM: Lysozyme (CL0037) Transgly; Transglycosylase (PF00912; HMM-score: 184.6)and 2 moreno clan defined PspB; Phage shock protein B (PF06667; HMM-score: 11.6)E-set (CL0159) Arch_flagellin; Archaebacterial flagellin (PF01917; HMM-score: 10.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.01
- Cytoplasmic Membrane Score: 9.99
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helix: 1
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002378
- TAT(Tat/SPI): 0.000201
- LIPO(Sec/SPII): 0.000807
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI: 446106515 NCBI
- RefSeq: WP_000184370 NCBI
- UniProt: see SAUSA300_1676
⊟Protein sequence[edit | edit source]
- MTNQDNNHQLNHRIYHFEKIYKAIKHVIVFIFMIFIAIVAIAVIAMSLYFHHLTKTSDSLSDDALIKKVRQIPGDELLDHNNKNLLYEYNHSQNSLIIGPKTSSPNVIKALTSSEDTLFYKHDGILPKAILRAMIQDIFNTDQSSGGSTITQQLVKNQVLTNEKTYSRKANELRLAIRLEHLLSKDEIIYTYLNIVPFGRDYNGANISGIASASYSLFGIPPKDLSIAQSAYLIGLLQSPYGYTPYEKDGTLKSDKDLKYSIQRQHYVLKRMLIEDQITEKEYNDALKYDIKSHLLNRKKR
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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