From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS10985 [old locus tag: SAUSA300_1998 ]
  • pan locus tag?: SAUPAN005290000
  • symbol: SAUSA300_RS10985
  • pan gene symbol?: —
  • synonym:
  • product: YeeE/YedE family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS10985 [old locus tag: SAUSA300_1998 ]
  • symbol: SAUSA300_RS10985
  • product: YeeE/YedE family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2155531..2156559
  • length: 1029
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGCAAAGAACAAGATTTTGTTTAACAGGTGGCTTTCGAGATATGTATGTGCAAAAGAAT
    AATAAGATGTTCTATGCATTATTAATCGCTATTACTATTCAAAGTATAGGATTATTGATT
    TTGACGGCAACAGATATTTTACAAATTCCTGCACATAGTTTTCCAATATTGGGAACAATT
    ATAGGTTCTTTTATTTTTGGAATTGGAATAGTATTGGCTGGAGGATGTGCAACAGGTACT
    TGGTATCGCGCTGGTGAAGGGCTAATTGGTAGTTGGATTGCATTAGTATTATATGCTGTT
    ACTGCAGCAATCACTAAAACAGGGATTTTAAAGCCAGTAATGGATAAAATTAATCAACCA
    ACGAATGTAAATAGTGATATGTCTCAAACAACTGGCATTCCGTTTTGGGGATTAGTCGTT
    ATATTAACTATAATCACCATTTTTCTAGTTGTAAGAACACTCAATAATAAGAAAGTTCGA
    GTTGCTGTTCCAAAACTAAAGCAACGTTATACAGGTATTAGATATTACCTTTTCGAAAAA
    CGATACCATCCATTTATTGCAGCAATTGTAATTGGACTTATCGCACTCTTAGCTTGGCCA
    ATGAGTGCATCAACTGGAAGAAATGACGGTTTAGGTATAACAACGCCTTCAGCAAATTTA
    GTACACTTTTTGATTACAGGTGAAACTAAATTTATTGATTGGGGTGTCTTTTTAGTTCTA
    GGAATTTTCATTGGTTCATATATTGCAGCTAGAGGATCAAGAGAATTTAAATGGCGATTG
    CCAGACAAGATTACAATACGAAACAGTGCCATTGGTGGCATATGTATGGGATTTGGTGCG
    TCAGTTGCTGGTGGTTGTTCTATCGGTAACGGTTTGGTTGAAACGGCAACGATGACTTGG
    CAAGGATGGATTGCGCTAGCATCGATGATAGTTGGTGTATGGACAATGAGTCATTTTATC
    TTTGTTCGTCCAATGAAAAAAGTACACCAACAATCTGCAAAGGTTAAACAGCAAACGCAA
    ATAGTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1029

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS10985 [old locus tag: SAUSA300_1998 ]
  • symbol: SAUSA300_RS10985
  • description: YeeE/YedE family protein
  • length: 342
  • theoretical pI: 10.7059
  • theoretical MW: 37439.2
  • GRAVY: 0.528947

⊟Function[edit | edit source]

  • TIGRFAM:
    putative selenium metabolism protein, YedE family (TIGR04112; HMM-score: 44)
    and 2 more
    Hypothetical proteins Conserved TIGR00701 family protein (TIGR00701; HMM-score: 11.3)
    tandem five-TM protein (TIGR01218; HMM-score: 8.3)
  • TheSEED: see SAUSA300_1998
  • PFAM:
    no clan defined Sulf_transp; Sulphur transport (PF04143; HMM-score: 332.7)
    and 1 more
    DUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 5.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.017321
    • TAT(Tat/SPI): 0.000391
    • LIPO(Sec/SPII): 0.00982
  • predicted transmembrane helices (TMHMM): 8

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MQRTRFCLTGGFRDMYVQKNNKMFYALLIAITIQSIGLLILTATDILQIPAHSFPILGTIIGSFIFGIGIVLAGGCATGTWYRAGEGLIGSWIALVLYAVTAAITKTGILKPVMDKINQPTNVNSDMSQTTGIPFWGLVVILTIITIFLVVRTLNNKKVRVAVPKLKQRYTGIRYYLFEKRYHPFIAAIVIGLIALLAWPMSASTGRNDGLGITTPSANLVHFLITGETKFIDWGVFLVLGIFIGSYIAARGSREFKWRLPDKITIRNSAIGGICMGFGASVAGGCSIGNGLVETATMTWQGWIALASMIVGVWTMSHFIFVRPMKKVHQQSAKVKQQTQIV

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SAUSA300_RS10985&oldid=89131"