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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS12570 [old locus tag: SAUSA300_2274 ]
  • pan locus tag?: SAUPAN005811000
  • symbol: SAUSA300_RS12570
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS12570 [old locus tag: SAUSA300_2274 ]
  • symbol: SAUSA300_RS12570
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2444922..2445491
  • length: 570
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGGCATTAATAGTATCTAGAGCTATATTATTTTTGATTTTAGCATTAGCTTTTGGAATA
    GCGACTGTTTTTCCTGAACAAAAATTACCATTATATATAGTATTCACATTATTTGTAGCA
    GTTGCGATCGTTTCGAATGTATGGTTTACACATCAAAACGTTAAAAAGCATATCATTAAG
    TTTAACAAATACGTCGCATACTTTTTATCCTTTGTCTCAGGGTTACTTTACATTGGATTT
    GTAATTTATACATTAACTATAGGGAGCTATGATGTTTTACCAATTATTATATTTGCAATA
    AGTATCGTATTGGTTCAAATATTAGAAAATATACTGGGAATCAGTATAAAAAATACGCGT
    CTATCAAACAAACAGTTGAAAGTCATCTCCAAGCAACGTGTTCAGCAATTTAAAGTCATA
    TCATTAATATTAGTAAGTGTGTCTATCGTGTTCATTTTTATTGCATTAATGCTTAAATGG
    TGGCTTTTACTTGTTATTAGCATTATTGTTTTGATTATTATTACAGTAGCAATGATTGTT
    TATGAAAAATATTATACGACTCCTGATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    570

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS12570 [old locus tag: SAUSA300_2274 ]
  • symbol: SAUSA300_RS12570
  • description: hypothetical protein
  • length: 189
  • theoretical pI: 10.3591
  • theoretical MW: 21532.2
  • GRAVY: 1.28889

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SAUSA300_2274
  • PFAM:
    no clan defined DUF3397; Protein of unknown function (DUF3397) (PF11877; HMM-score: 17.9)
    Hypoth_1 (CL0447) DUF3784; Domain of unknown function (DUF3784) (PF12650; HMM-score: 14.6)
    and 2 more
    no clan defined YwiC; YwiC-like protein (PF14256; HMM-score: 11.8)
    DUF4395; Domain of unknown function (DUF4395) (PF14340; HMM-score: 8.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.030605
    • TAT(Tat/SPI): 0.002325
    • LIPO(Sec/SPII): 0.066213
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MALIVSRAILFLILALAFGIATVFPEQKLPLYIVFTLFVAVAIVSNVWFTHQNVKKHIIKFNKYVAYFLSFVSGLLYIGFVIYTLTIGSYDVLPIIIFAISIVLVQILENILGISIKNTRLSNKQLKVISKQRVQQFKVISLILVSVSIVFIFIALMLKWWLLLVISIIVLIIITVAMIVYEKYYTTPD

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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