Jump to navigation
Jump to search
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS12820 [old locus tag: SAUSA300_2320 ]
- pan locus tag?: SAUPAN005892000
- symbol: SAUSA300_RS12820
- pan gene symbol?: —
- synonym:
- product: membrane protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS12820 [old locus tag: SAUSA300_2320 ]
- symbol: SAUSA300_RS12820
- product: membrane protein
- replicon: chromosome
- strand: -
- coordinates: 2494056..2494487
- length: 432
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (2494056..2494487) NCBI
- BioCyc: SAUSA300_RS12820 BioCyc
- MicrobesOnline: see SAUSA300_2320
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421ATGCGTAGGTTATTATATTCATTTCTTTTTTATATGATCATAGGTTTATTTAGTGGCTTT
TTCTATAGAGAGCTAACAAAAGCATATGATTTTACTGGTACAACACAATTATCACTTGTA
CACACACATACACTTATTTTAGGTATGTTTATGTTTTTAATATTATTACCATTGGAGAAG
TTATTTAAATTATCAAGTTACTACTTATTTAACTGGTTCTTCTATGTATATAACATAGGT
GTTATCGTTACTATAGGTATGATGGTGACAAAAGGATTCTTCCAAGTCACTGGTAAATCA
TACTCTCCAGAAGCATTTGCAGGCTTTGCAGGTATTGGGCACACAGGTATGCTTGCAGGT
TTATTGTTGCTATTTTTCCTTTTAAGACAAGCAATTCTTAAAGAACCACGTGATGAGTCT
TTTAAAAAATAA60
120
180
240
300
360
420
432
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS12820 [old locus tag: SAUSA300_2320 ]
- symbol: SAUSA300_RS12820
- description: membrane protein
- length: 143
- theoretical pI: 9.9925
- theoretical MW: 16589.7
- GRAVY: 0.64965
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SAUSA300_2320
- PFAM: no clan defined DUF2871; Protein of unknown function (DUF2871) (PF11070; HMM-score: 158.4)and 1 moreCyt_c_ox_IV; Cytochrome c oxidase subunit IV (PF12270; HMM-score: 9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.086244
- TAT(Tat/SPI): 0.001751
- LIPO(Sec/SPII): 0.102609
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit | edit source]
- GI: 447176208 NCBI
- RefSeq: WP_001253464 NCBI
- UniProt: see SAUSA300_2320
⊟Protein sequence[edit | edit source]
- MRRLLYSFLFYMIIGLFSGFFYRELTKAYDFTGTTQLSLVHTHTLILGMFMFLILLPLEKLFKLSSYYLFNWFFYVYNIGVIVTIGMMVTKGFFQVTGKSYSPEAFAGFAGIGHTGMLAGLLLLFFLLRQAILKEPRDESFKK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.