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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS12830 [old locus tag: SAUSA300_2321 ]
  • pan locus tag?: SAUPAN005894000
  • symbol: SAUSA300_RS12830
  • pan gene symbol?: —
  • synonym:
  • product: phage infection protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS12830 [old locus tag: SAUSA300_2321 ]
  • symbol: SAUSA300_RS12830
  • product: phage infection protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2494694..2495971
  • length: 1278
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGAATATATTTAAAAATAAATTATTATGGATTGCACCAATAGCAACTATGATTATCTTG
    GTAATCTTTTCTTTAGCTTTTTATCCTGCATATAATCCTAAACCAAAAGATTTACCAATT
    GGTATATTAAACGAGGATAAAGGTACAACGATTCAAGATAAAAATGTTAACATTGGTAAA
    AAATTAGAGGATAAATTATTAGATAGTGATTCTAATAAAATTAAATGGGTTAAGGTTGAT
    AGTGAAAAAGACCTTGAAAAAGATTTGAAAGATCAAAAAATCTTTGGAGTAGCTATTATT
    GATAAAGACTTTTCAAAAGATGCTATGAGTAAAACACAAAAAGTAGTTATGGATAGTAAA
    AAAGAAGAAATGCAACAAAAAGTTGCTTCAGGTGAAATTCCGCCACAAGTGGTTCAACAA
    ATGAAACAAAAAATGGGGAATCAACAAGTAGAGGTTAAGCAGGCTAAATTTAAAACGATT
    GTAAGTGAAGGATCAAGCTTACAAGGTTCACAAATTGCATCAGCTGTGTTAACTGGTATG
    GGTGATAATATTAATGCTCAAATTACGAAGCAAAGTTTGGAAACATTAACGAGTCAAAAT
    GTTAAAGTCAATGCCGCGGACATCAATGGTTTGACGAATCCAGTAAAAGTGGATAATGAA
    AAACTTAATAAAGTTAAAGATCACCAAGCAGGTGGTAATGCACCATTCCTAATGTTTATG
    CCAATTTGGATAGGTTCAATCGTAACGTCTATCTTATTGTTCTTTGCATTTAGAACTAGT
    AACAATATCGTCGTGCAACATCGTATCATTGCTTCAATTGGACAGATGATATTTGCAGTT
    GTTGCAGCATTTGCAGGTAGCTTTGTTTATATTTATTTCATGCAAGGCGTTCAAAGATTT
    GATTTTGACCATCCAAATCGTATCGCAATTTTTGTAGCATTTGCGATTCTTGGTTTCGTG
    GGCCTTATTTTAGGTGTTATGGTATGGCTAGGTATGAAGTCAGTTCCAATTTTCTTCATT
    TTAATGTTCTTTAGTATGCAACTTGTAACGTTACCTAAACAAATGTTGCCTGAAAGTTAT
    CAAAAATATGTATATGATTGGAATCCATTCACACACTATGCAACAAGTGTAAGAGAACTA
    TTATACTTGAATCATCATATTGAATTAAATAGTACAATGTGGATGTTTATAGGGTTTATG
    ATTTTTGGCGCTGTATCAAGTTTAGTTTCAGCTATTGTTAGAAAACATAGCACAAAACGT
    ACTGAAGTGCCGTCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1278

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS12830 [old locus tag: SAUSA300_2321 ]
  • symbol: SAUSA300_RS12830
  • description: phage infection protein
  • length: 425
  • theoretical pI: 9.98074
  • theoretical MW: 47826.8
  • GRAVY: 0.0976471

⊟Function[edit | edit source]

  • TIGRFAM:
    YhgE/Pip N-terminal domain (TIGR03061; HMM-score: 71.6)
    and 4 more
    YhgE/Pip C-terminal domain (TIGR03062; HMM-score: 53.6)
    type VII secretion protein EsaA (TIGR03929; HMM-score: 25.3)
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain (TIGR03197; HMM-score: 17.7)
    ferredoxin-type protein, NapH/MauN family (TIGR02163; HMM-score: 12.8)
  • TheSEED: see SAUSA300_2321
  • PFAM:
    ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 89)
    and 3 more
    no clan defined DUF1598; Protein of unknown function (DUF1598) (PF07643; HMM-score: 14.9)
    NADP_Rossmann (CL0063) Methyltransf_18; Methyltransferase domain (PF12847; HMM-score: 14.9)
    Tetraspannin (CL0347) CD20; CD20-like family (PF04103; HMM-score: 6.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.403898
    • TAT(Tat/SPI): 0.001497
    • LIPO(Sec/SPII): 0.027886
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNIFKNKLLWIAPIATMIILVIFSLAFYPAYNPKPKDLPIGILNEDKGTTIQDKNVNIGKKLEDKLLDSDSNKIKWVKVDSEKDLEKDLKDQKIFGVAIIDKDFSKDAMSKTQKVVMDSKKEEMQQKVASGEIPPQVVQQMKQKMGNQQVEVKQAKFKTIVSEGSSLQGSQIASAVLTGMGDNINAQITKQSLETLTSQNVKVNAADINGLTNPVKVDNEKLNKVKDHQAGGNAPFLMFMPIWIGSIVTSILLFFAFRTSNNIVVQHRIIASIGQMIFAVVAAFAGSFVYIYFMQGVQRFDFDHPNRIAIFVAFAILGFVGLILGVMVWLGMKSVPIFFILMFFSMQLVTLPKQMLPESYQKYVYDWNPFTHYATSVRELLYLNHHIELNSTMWMFIGFMIFGAVSSLVSAIVRKHSTKRTEVPS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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