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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS14730 [old locus tag: SAUSA300_pUSA020002 ]
  • pan locus tag?:
  • symbol: SAUSA300_RS14730
  • pan gene symbol?:
  • synonym:
  • product: Plasmid recombination enzyme type 3

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS14730 [old locus tag: SAUSA300_pUSA020002 ]
  • symbol: SAUSA300_RS14730
  • product: Plasmid recombination enzyme type 3
  • replicon: pUSA02
  • strand: +
  • coordinates: 1601..2842
  • length: 1242
  • essential: unknown

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGTCTTATTCCATTGTTAGAGTTTCAAAAGTTAAATCTGGAACAAATACAACGGGCATA
    CAAAAACATGTTCAAAGAGAAAATAATAATTATGAAAATGAAGATATAGACCATAGTAAA
    ACTTACTTAAATTATGATTTGGTAAATGCTAATAAACAGAATTTTAATAACTTGATTGAT
    GAAAAAATCGAACAGAATTATACAGGCAAAAGAAAAATTAGAACAGACGCGATTAAACAC
    ATTGATGGTTTAATTACATCAGACAATGATTTCTTTGATAATCAAACGCCAGAAGATACA
    AAGCAGTTTTTTGAATATGCTAAAGAGTTTTTAGAACAAGAATACGGTAAAGATAATTTA
    TTATATGCAACAGTTCACATGGACGAAAAAACACCACATATGCATTATGGCGTTGTTCCA
    ATAACTGATGATGGTCGTTTAAGTGCTAAAGAAGTTGTAGGTAATAAAAAAGCTTTAACA
    GCGTTTCAAGATAGATTTAATGAGCATGTTAAACAACGAGGATATGATTTAGAACGTGGG
    CAATCAAGACAAGTAACAAATGCTAAACATGAGCAAATAAGTCAGTATAAACAAAAAACA
    GAATATCATAAGCAAGAATATGAACGTGAGAGCCAAAAAACAGACCATATAAAGCAAAAG
    AACGATAAATTAATGCAAGAGTACCAAAAATCGTTAAATACGCTTAAAAAGCCTATAAAT
    GTTCCGTATGAGCAAGAAACTGAAAAAGTAGGTGGTTTATTTAGCAAAGAAATACAAGAA
    ACTGGAAATGTTGTAATAAGCCAAAAAGATTTCAATGAATTTCAGAAACAGATAAAAGCT
    GCTCAAGATATTTCGGAAGATTACGAGTATATAAAGTCTGGTAGAGCCTTAGATGATAAA
    GATAAGGAAATACGAGAGAAAGATGATTTATTAAATAAAGCAGTTGAGCGTATTGAAAAC
    GCAGACGATAATTTTAACCAACTTTACGAAAATGCAAAGCCACTTAAAGAGAATATAGAA
    ATAGCGTTAAAGCTTTTAAAAATCTTACTAAAAGAGTTAGAACGAGTTTTAGGAAGAAAT
    ACCTTTGCGGAAAGAGTTAATAAGTTAACAGAAGATGAACCAAAACTAAATGGTTTAGCA
    GGAAACTTAGATAAAAAAATGAATCCAGAATTATATTCAGAACAGGAACAGCAACAAGAA
    CAACAAAAGAATCAAAAACGAGATAGAGGTATGCACTTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1242

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SAUSA300_RS14730 [old locus tag: SAUSA300_pUSA020002 ]
  • symbol: SAUSA300_RS14730
  • description: Plasmid recombination enzyme type 3
  • length: 413
  • theoretical pI: 6.17398
  • theoretical MW: 48525.6
  • GRAVY: -1.20266

Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Pathogenesis virulence factor Mce family protein (TIGR00996; HMM-score: 13.9)
  • TheSEED: see SAUSA300_pUSA020002
  • PFAM:
    Rep (CL0169) Mob_Pre; Plasmid recombination enzyme (PF01076; HMM-score: 255.3)
    and 1 more
    LigB (CL0283) Memo; Memo-like protein (PF01875; HMM-score: 9.7)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.013583
    • TAT(Tat/SPI): 0.000704
    • LIPO(Sec/SPII): 0.003118
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MSYSIVRVSKVKSGTNTTGIQKHVQRENNNYENEDIDHSKTYLNYDLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQFFEYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALTAFQDRFNEHVKQRGYDLERGQSRQVTNAKHEQISQYKQKTEYHKQEYERESQKTDHIKQKNDKLMQEYQKSLNTLKKPINVPYEQETEKVGGLFSKEIQETGNVVISQKDFNEFQKQIKAAQDISEDYEYIKSGRALDDKDKEIREKDDLLNKAVERIENADDNFNQLYENAKPLKENIEIALKLLKILLKELERVLGRNTFAERVNKLTEDEPKLNGLAGNLDKKMNPELYSEQEQQQEQQKNQKRDRGMHL

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]