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COLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS14915 [old locus tag: SAUSA300_pUSA030034 ]
  • pan locus tag?:
  • symbol: SAUSA300_RS14915
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS14915 [old locus tag: SAUSA300_pUSA030034 ]
  • symbol: SAUSA300_RS14915
  • product: hypothetical protein
  • replicon: pUSA03
  • strand: +
  • coordinates: 35220..36260
  • length: 1041
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGAGTAACGTATATGTAATGGCTTTAGATTTTGGTAATGGATTTGTAAAAGGGAAGATT
    AATGATGAAAAATTTGTAATCCCTTCAAGAATCGGAAGAAAAACTAATGAAAACAATCAA
    TTAAAAGGATTTGTTGATAATAAATTAGATGTATCAGAATTTATTATCAATGGGAACAAT
    GATGAAGTATTACTATTTGGTAATGATTTAGATAAAACTACAAATACTGGTAAAGATACT
    GCCTCAACAAATGATAGATATGATATTAAATCTTTCAAAGATTTGGTTGAATGTTCTATA
    GGATTATTAGCAAGAGAAGTACCAGAAGAAGTTGTCAACGTTGTAATTGCTACTGGTATG
    CCAAGTAATGAAATAGGAACTGATAAACAAGCTAAGTTTGAAAAACTTTTAAATAAAAGT
    CGTTTAATTGAAATTGACGGTATCGCTAAAACAATTAATGTTAAAGGCGTTAAGATAGTA
    GCTCAACCTATGGGAACTTTACTTGATCTTAATATGGAAAATGGAAAAGTATTCAAAGCA
    TTTACAGAAGGCAAGTACAGTGTTCTTGACTTTGGTAGTGGTACTACAATTATTGATACT
    TATCAAAATATGAAACGTGTAGAGGAAGAAAGTTTTGTTATAAACAAAGGTACTATTGAT
    TTTTATAAACGAATTGCTAGTCACGTATCTAAAAAATCAGAAGGTGCCTCAATCACACCA
    CGTATGATTGAAAAAGGATTAGAATACAAGCAATGTAAACTTAATCAAAAAACAGTTATT
    GACTTTAAAGATGAATTTTATAAGGAACAGGATAGTTTGATAGAAGAAGTTATGAGTAAC
    TTTGAAATCACTGTAGGTAATATAAATTCAATTGACAGAATTATTGTTACTGGTGGTGGT
    GCAAACATTCATTTTGATTCATTAAGTCATTATTATTCAGATGTGTTCGAGAAAGCAGAT
    GATAGCCAGTTTAGTAATGTTCGTGGATATGAAAAATTGGGGGAATTGTTAAAAAACAAA
    GTAGAGCAAGAAAGTAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1041


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS14915 [old locus tag: SAUSA300_pUSA030034 ]
  • symbol: SAUSA300_RS14915
  • description: hypothetical protein
  • length: 346
  • theoretical pI: 5.00254
  • theoretical MW: 38808.7
  • GRAVY: -0.425723

⊟Function[edit | edit source]

  • TIGRFAM:
    PRTRC system protein D (TIGR03739; HMM-score: 71.6)
    and 1 more
    dihydroxyacetone kinase, phosphotransfer subunit (TIGR02364; HMM-score: 13.6)
  • TheSEED: see SAUSA300_pUSA030034
  • PFAM:
    Actin_ATPase (CL0108) ALP_N; Actin like proteins N terminal domain (PF17989; HMM-score: 69.9)
    and 4 more
    MreB-like_C; Archaeal actin homologue MreB-like, C-terminal (PF21522; HMM-score: 35.8)
    ParM_N; Plasmid segregation protein ParM, C-terminal (PF21523; HMM-score: 15.3)
    no clan defined DASH_Dad1; DASH complex subunit Dad1 (PF08649; HMM-score: 14.3)
    DUF7381; Domain of unknown function (DUF7381) (PF24100; HMM-score: 13.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8617
    • Cytoplasmic Membrane Score: 0.04
    • Cell wall & surface Score: 0.0005
    • Extracellular Score: 0.0978
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004718
    • TAT(Tat/SPI): 0.000157
    • LIPO(Sec/SPII): 0.000837
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSNVYVMALDFGNGFVKGKINDEKFVIPSRIGRKTNENNQLKGFVDNKLDVSEFIINGNNDEVLLFGNDLDKTTNTGKDTASTNDRYDIKSFKDLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTIDFYKRIASHVSKKSEGASITPRMIEKGLEYKQCKLNQKTVIDFKDEFYKEQDSLIEEVMSNFEITVGNINSIDRIIVTGGGANIHFDSLSHYYSDVFEKADDSQFSNVRGYEKLGELLKNKVEQESK

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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