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04-0298108BA0217611819-97685071193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS14925 [old locus tag: SAUSA300_pUSA030036 ]
  • pan locus tag?:
  • symbol: SAUSA300_RS14925
  • pan gene symbol?:
  • synonym:
  • product: transcriptional regulator

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS14925 [old locus tag: SAUSA300_pUSA030036 ]
  • symbol: SAUSA300_RS14925
  • product: transcriptional regulator
  • replicon: pUSA03
  • strand: -
  • coordinates: 36596..36856
  • length: 261
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_007792 (36596..36856) NCBI
  • BioCyc:
  • MicrobesOnline:

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGAATGAATACCGTATACAAAAACTATATAGATACATTTGTTTAGAATTTAAAAACCAG
    CGTCAACTCATAGGCAAGCGACAAGAAGAAGTTGCATTTGATTTGAGTGTGACTGCTGGT
    CATCTTTCACGTATCGAGAATGGTAAAAAACCTAGAATAGCATTACATACATTTTTAGTA
    ATGTCTGAATACTATGGTGTAGACTTTCATAAGGTAGTTAAAAATGCAGAAGAAAAAATG
    GAATTGGATGAAGGAATATAG
    60
    120
    180
    240
    261

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SAUSA300_RS14925 [old locus tag: SAUSA300_pUSA030036 ]
  • symbol: SAUSA300_RS14925
  • description: transcriptional regulator
  • length: 86
  • theoretical pI: 8.4516
  • theoretical MW: 10207.7
  • GRAVY: -0.534884

Function[edit | edit source]

  • TIGRFAM:
    Signal transduction Regulatory functions DNA interactions transcriptional regulator, y4mF family (TIGR03070; HMM-score: 12.3)
  • TheSEED:
  • PFAM:
    HTH (CL0123) HTH_3; Helix-turn-helix (PF01381; HMM-score: 30.9)
    HTH_31; Helix-turn-helix domain (PF13560; HMM-score: 27.3)
    and 1 more
    HTH_19; Helix-turn-helix domain (PF12844; HMM-score: 22.9)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003896
    • TAT(Tat/SPI): 0.000185
    • LIPO(Sec/SPII): 0.000986
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

  • GI: 446930957 NCBI
  • RefSeq: WP_001008213 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MNEYRIQKLYRYICLEFKNQRQLIGKRQEEVAFDLSVTAGHLSRIENGKKPRIALHTFLVMSEYYGVDFHKVVKNAEEKMELDEGI

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]