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COLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS00085 [old locus tag: SAP019 ]
- pan locus tag?:
- symbol: SA_RS00085
- pan gene symbol?: —
- synonym:
- product: lactococcin 972 family bacteriocin
⊟Additional information (user-provided)[edit | edit source]
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA_RS00085 [old locus tag: SAP019 ]
- symbol: SA_RS00085
- product: lactococcin 972 family bacteriocin
- replicon: pN315
- strand: +
- coordinates: 16503..16796
- length: 294
- essential: unknown
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241ATGAAAAAGAAATTTGTTTCTAGTTGTATTGCTAGTACAATCTTATTCGGCACTTTATTA
GGTGTAACTTATAAAGCTGAAGCTGCAACAGTACATGTAGCTGGTGGTGTTTGGAGCCAT
GGTATTGGAAAACATTACGTATGGTCTTATTATAGTCACAATAAAAGAAATCATGGTTCA
ACAGCAGTAGGGAAATATTCATCTTTTAGTGGTGTTGCTCGACCTGGTGTTCAATCTAAG
GCATCTGCTCCAAAGGCTTGGGGTGGAAACAAAACATTTTATAGTCTTCACTAA60
120
180
240
294
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA_RS00085 [old locus tag: SAP019 ]
- symbol: SA_RS00085
- description: lactococcin 972 family bacteriocin
- length: 97
- theoretical pI: 10.6702
- theoretical MW: 10407.8
- GRAVY: -0.182474
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Toxin production and resistance bacteriocin, lactococcin 972 family (TIGR01653; HMM-score: 105.4)
- TheSEED: see SAP019
- PFAM: no clan defined Lactococcin_972; Bacteriocin (Lactococcin_972) (PF09683; HMM-score: 52.2)and 1 moreCyanoTRADDas_TM; Cyanobacterial TRADD-N associated 2-Transmembrane domain (PF20712; HMM-score: 15.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 9.87
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0
- Cell wall & surface Score: 0.0002
- Extracellular Score: 0.9998
- LocateP:
- SignalP: Signal peptide SP(Sec/SPI) length 28 aa
- SP(Sec/SPI): 0.995707
- TAT(Tat/SPI): 0.001301
- LIPO(Sec/SPII): 0.000947
- Cleavage Site: CS pos: 28-29. AEA-AT. Pr: 0.9795
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKKKFVSSCIASTILFGTLLGVTYKAEAATVHVAGGVWSHGIGKHYVWSYYSHNKRNHGSTAVGKYSSFSGVARPGVQSKASAPKAWGGNKTFYSLH
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Additional information (user-provided)[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Other information (user-provided)[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]